Variant report

Variant	rs73490984
Chromosome Location	chr11:59668768-59668769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs59035014	1.00[AMR][1000 genomes]
rs66980105	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490905	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490909	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490917	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490921	1.00[AMR][1000 genomes]
rs73490963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490973	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73490979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73493107	1.00[AMR][1000 genomes]
rs73493111	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv334	chr11:59663800-59709104	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1045477	chr11:59664372-59714143	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59660000-59668800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:59666200-59669800	Weak transcription	Spleen	Spleen
3	chr11:59666400-59668800	Weak transcription	K562	blood
4	chr11:59667000-59669400	Enhancers	Fetal Brain Female	brain
5	chr11:59667400-59669000	Weak transcription	Fetal Brain Male	brain
6	chr11:59667600-59669000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:59668000-59669000	Enhancers	HUVEC	blood vessel
8	chr11:59668200-59669000	Enhancers	NH-A	brain
9	chr11:59668200-59669400	Enhancers	NHEK	skin
10	chr11:59668400-59669200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:59668400-59669400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:59668400-59669400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:59668400-59669600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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