Variant report

Variant	rs73491425
Chromosome Location	chr11:76689903-76689904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1062170	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135310	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17135319	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17160169	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2187498	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4341568	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4597093	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57505872	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57756929	1.00[EUR][1000 genomes]
rs58530046	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58566866	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60982520	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592673	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592681	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6592695	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6592696	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7102199	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7103881	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7104807	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7105271	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7105797	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7106009	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7106029	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7113911	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114082	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114367	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7115053	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7118970	1.00[EUR][1000 genomes]
rs7119233	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489514	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489576	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489579	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489582	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489585	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73489594	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73491456	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73507813	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507817	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507826	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73507833	1.00[EUR][1000 genomes]
rs7924330	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7932066	1.00[EUR][1000 genomes]
rs7932449	1.00[EUR][1000 genomes]
rs7933347	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7943089	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943364	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943396	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945781	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9704887	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9919623	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76666800-76695400	Weak transcription	NHEK	skin
3	chr11:76672200-76697800	Weak transcription	Left Ventricle	heart
4	chr11:76672400-76696000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:76673800-76690400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:76674400-76696000	Weak transcription	Small Intestine	intestine
7	chr11:76675000-76691600	Weak transcription	Fetal Lung	lung
8	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:76675000-76725600	Weak transcription	A549	lung
10	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
11	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:76683400-76690600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
16	chr11:76684400-76699400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr11:76684800-76691000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:76687600-76691400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:76687800-76690200	Weak transcription	Right Atrium	heart
20	chr11:76688000-76690000	ZNF genes & repeats	Primary B cells from cord blood	blood
21	chr11:76688000-76690200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:76688000-76690200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
23	chr11:76688200-76690000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr11:76688200-76690000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:76688200-76690200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:76688200-76690200	ZNF genes & repeats	Dnd41	blood
27	chr11:76688400-76690000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:76688400-76690200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:76688400-76690200	ZNF genes & repeats	Spleen	Spleen
30	chr11:76688400-76690400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
31	chr11:76688400-76695600	Weak transcription	HMEC	breast
32	chr11:76688600-76690200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr11:76688600-76690200	ZNF genes & repeats	Fetal Intestine Large	intestine
34	chr11:76688600-76690200	ZNF genes & repeats	Fetal Intestine Small	intestine
35	chr11:76688600-76690200	ZNF genes & repeats	Fetal Stomach	stomach
36	chr11:76688600-76690200	ZNF genes & repeats	Lung	lung
37	chr11:76688600-76695600	Weak transcription	Stomach Mucosa	stomach
38	chr11:76688600-76710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:76688800-76690000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:76688800-76690000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:76688800-76690200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:76689000-76690000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr11:76689000-76690200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:76689200-76690400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr11:76689200-76691200	Weak transcription	Colonic Mucosa	Colon
46	chr11:76689200-76696000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr11:76689200-76734600	Weak transcription	Liver	Liver
48	chr11:76689400-76690000	Enhancers	Aorta	Aorta
49	chr11:76689400-76690200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr11:76689400-76690200	Strong transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links