Variant report

Variant	rs7349232
Chromosome Location	chr2:181953354-181953355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10171108	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs10171998	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10187842	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10930950	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11688120	0.84[ASN][1000 genomes]
rs11692625	0.84[ASN][1000 genomes]
rs11893772	0.87[ASN][1000 genomes]
rs11893821	0.86[ASN][1000 genomes]
rs12473091	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12621277	0.82[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12989967	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12999974	0.86[ASN][1000 genomes]
rs13004683	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs13004750	1.00[ASN][1000 genomes]
rs13011738	0.84[ASN][1000 genomes]
rs13019038	0.92[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs13020845	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs13026070	0.85[ASN][1000 genomes]
rs13029368	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs13031518	0.87[ASN][1000 genomes]
rs13033467	0.86[ASN][1000 genomes]
rs1829365	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34467063	0.84[ASN][1000 genomes]
rs34504038	0.84[ASN][1000 genomes]
rs34714467	0.86[ASN][1000 genomes]
rs34825850	0.87[ASN][1000 genomes]
rs35076700	0.84[ASN][1000 genomes]
rs35323141	0.90[ASN][1000 genomes]
rs35482602	0.84[ASN][1000 genomes]
rs35543145	0.86[ASN][1000 genomes]
rs35702511	0.84[ASN][1000 genomes]
rs35725888	0.87[ASN][1000 genomes]
rs4346343	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs4366861	1.00[CHB][hapmap];0.86[CHD][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs4510177	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs4595925	1.00[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs4667005	0.85[CHB][hapmap];0.89[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap]
rs4667008	0.85[CHB][hapmap]
rs4990275	0.84[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs55900432	0.86[ASN][1000 genomes]
rs55954384	0.86[ASN][1000 genomes]
rs59639779	0.82[ASN][1000 genomes]
rs6433878	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6433879	1.00[CHB][hapmap]
rs6433883	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs6704750	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6706397	0.85[JPT][hapmap];0.86[MEX][hapmap]
rs6706565	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6710650	0.85[JPT][hapmap]
rs6731268	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6735373	0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6743720	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6744130	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6745190	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6746347	0.86[ASN][1000 genomes]
rs6759865	0.86[ASN][1000 genomes]
rs72887083	0.84[ASN][1000 genomes]
rs7371639	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7558428	0.86[ASN][1000 genomes]
rs7559803	0.84[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap];0.85[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap]
rs7569991	0.85[JPT][hapmap];0.86[MEX][hapmap]
rs7581267	0.85[ASN][1000 genomes]
rs7598960	0.86[ASN][1000 genomes]
rs9808318	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7349232	ITGA4	cis	parietal	SCAN
rs7349232	ITGA4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181938400-181954800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links