Variant report

Variant	rs73497566
Chromosome Location	chr13:51410186-51410187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60890491	1.00[AMR][1000 genomes]
rs73497513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497518	1.00[AMR][1000 genomes]
rs73497540	1.00[AMR][1000 genomes]
rs73497575	1.00[AFR][1000 genomes]
rs73497578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73497583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51375600-51416400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:51406200-51414200	Weak transcription	Thymus	Thymus
3	chr13:51408400-51416800	Weak transcription	Fetal Kidney	kidney
4	chr13:51408600-51411000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr13:51408600-51416000	Weak transcription	Fetal Brain Male	brain
6	chr13:51409000-51411200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:51409200-51411200	Strong transcription	Dnd41	blood
8	chr13:51409400-51411600	Genic enhancers	Fetal Thymus	thymus
9	chr13:51409600-51415200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr13:51409800-51410600	ZNF genes & repeats	Fetal Brain Female	brain
11	chr13:51409800-51414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:51410000-51416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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