Variant report
| Variant | rs73500825 |
|---|---|
| Chromosome Location | chr11:34010442-34010443 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:7)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:7 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:33877952..33881017-chr11:34009873..34013165,3 | K562 | blood: | |
| 2 | chr11:34006736..34012057-chr11:34071931..34075352,5 | K562 | blood: | |
| 3 | chr11:34005894..34011017-chr11:34129149..34133359,4 | K562 | blood: | |
| 4 | chr11:33856097..33858302-chr11:34008907..34011375,2 | MCF-7 | breast: | |
| 5 | chr11:33857237..33859734-chr11:34009621..34012332,2 | K562 | blood: | |
| 6 | chr11:34008766..34011082-chr11:34071931..34074716,3 | K562 | blood: | |
| 7 | chr11:33856759..33857658-chr11:34009325..34010466,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000135387 | Chromatin interaction |
| ENSG00000135372 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs36006049 | 0.91[AFR][1000 genomes] |
| rs57975123 | 0.91[AFR][1000 genomes] |
| rs58487250 | 0.91[AFR][1000 genomes] |
| rs61596717 | 1.00[AFR][1000 genomes] |
| rs68136693 | 0.91[AFR][1000 genomes] |
| rs73486510 | 1.00[AFR][1000 genomes] |
| rs73486543 | 0.91[AFR][1000 genomes] |
| rs73497021 | 0.91[AFR][1000 genomes] |
| rs73497058 | 0.91[AFR][1000 genomes] |
| rs73497061 | 0.91[AFR][1000 genomes] |
| rs73499094 | 0.91[AFR][1000 genomes] |
| rs73500435 | 0.91[AFR][1000 genomes] |
| rs73500462 | 0.91[AFR][1000 genomes] |
| rs73500465 | 0.91[AFR][1000 genomes] |
| rs73500472 | 0.91[AFR][1000 genomes] |
| rs73500476 | 0.84[AFR][1000 genomes] |
| rs73500839 | 1.00[AFR][1000 genomes] |
| rs73500853 | 1.00[AFR][1000 genomes] |
| rs73500860 | 0.92[AFR][1000 genomes] |
| rs73501015 | 0.91[AFR][1000 genomes] |
| rs73501036 | 0.91[AFR][1000 genomes] |
| rs73501046 | 0.91[AFR][1000 genomes] |
| rs73501051 | 0.91[AFR][1000 genomes] |
| rs73501061 | 0.91[AFR][1000 genomes] |
| rs73501093 | 0.91[AFR][1000 genomes] |
| rs73501100 | 0.91[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:34006400-34018200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
