Variant report

Variant	rs73500997
Chromosome Location	chr6:101082423-101082424
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101081950..101083969-chr6:101086738..101088997,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17060815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17060844	1.00[AMR][1000 genomes]
rs17060882	1.00[AMR][1000 genomes]
rs17061045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281843	1.00[AMR][1000 genomes]
rs58745408	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61019291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570925	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6570931	0.85[AFR][1000 genomes]
rs73500956	1.00[AMR][1000 genomes]
rs73500987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73502915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73502918	0.89[AFR][1000 genomes]
rs73504907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73760704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7768156	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886444	chr6:100961198-101084946	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv463986	chr6:100995048-101084946	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv604264	chr6:100995048-101084946	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886446	chr6:101018032-101084946	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886447	chr6:101018032-101091434	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv470848	chr6:101036713-101102584	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv1840320	chr6:101039215-101102585	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv604268	chr6:101049108-101091434	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	esv1835914	chr6:101054054-101094554	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
24	esv1836506	chr6:101054054-101094554	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
25	nsv463990	chr6:101058886-101123503	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
26	nsv604269	chr6:101058886-101123503	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
27	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
28	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
29	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
30	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
31	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
32	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
33	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101025800-101099800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:101032400-101102000	Weak transcription	Thymus	Thymus
3	chr6:101032400-101104400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:101032600-101102000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:101034000-101085000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:101034400-101084200	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:101034400-101092400	Weak transcription	Pancreas	Pancrea
9	chr6:101036000-101084800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:101036200-101084000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:101037400-101110600	Weak transcription	K562	blood
12	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr6:101038000-101084200	Weak transcription	Fetal Thymus	thymus
14	chr6:101050800-101084400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr6:101062600-101101600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:101062800-101094200	Weak transcription	Fetal Stomach	stomach
17	chr6:101062800-101097000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:101063800-101102600	Weak transcription	Small Intestine	intestine
19	chr6:101064400-101084600	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:101065400-101092400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:101066400-101086000	Weak transcription	Colonic Mucosa	Colon
22	chr6:101066600-101084000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:101066600-101084800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:101066800-101084400	Weak transcription	Fetal Kidney	kidney
25	chr6:101067000-101083800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:101067200-101084200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:101067600-101102200	Weak transcription	Right Ventricle	heart
28	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:101068800-101084400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:101068800-101093200	Weak transcription	Esophagus	oesophagus
31	chr6:101069800-101085600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:101070200-101084000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:101070200-101084000	Weak transcription	Left Ventricle	heart
34	chr6:101070200-101084400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:101070200-101084600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:101070200-101084600	Weak transcription	Fetal Lung	lung
37	chr6:101070200-101094200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:101070400-101084000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr6:101070400-101084400	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:101070400-101084400	Weak transcription	GM12878-XiMat	blood
41	chr6:101070400-101092400	Weak transcription	Fetal Intestine Small	intestine
42	chr6:101070400-101092600	Weak transcription	Lung	lung
43	chr6:101070400-101094600	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr6:101070400-101096200	Weak transcription	Spleen	Spleen
45	chr6:101070400-101100000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr6:101071600-101094400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:101071600-101104600	Weak transcription	Brain Angular Gyrus	brain
48	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
49	chr6:101071800-101099200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:101073600-101084200	Weak transcription	Ovary	ovary

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