Variant report

Variant	rs73501051
Chromosome Location	chr11:34126199-34126200
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:130)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:130 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34125693-34127647	Hela-S3	cervix:	n/a	n/a
2	MAFF	chr11:34126019-34127228	K562	blood:	n/a	chr11:34126410-34126428
3	RCOR1	chr11:34125619-34127924	K562	blood:	n/a	n/a
4	BCLAF1	chr11:34125506-34127748	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:34124455-34128004	K562	blood:	n/a	n/a
6	POLR2A	chr11:34126038-34127495	HCT-116	colon:	n/a	n/a
7	POLR2A	chr11:34126048-34128116	PBDE	blood:	n/a	n/a
8	RELA	chr11:34126070-34127700	GM10847	blood:	n/a	n/a
9	POLR2A	chr11:34125395-34127838	GM12892	blood:	n/a	n/a
10	RUNX3	chr11:34125872-34127516	GM12878	blood:	n/a	n/a
11	POLR2A	chr11:34124137-34127718	PFSK-1	brain:	n/a	n/a
12	ELF1	chr11:34125884-34127485	A549	lung:	n/a	chr11:34127321-34127333
13	POLR2A	chr11:34125289-34127190	K562	blood:	n/a	n/a
14	PML	chr11:34126035-34127415	GM12878	blood:	n/a	chr11:34127259-34127267
15	POLR2A	chr11:34126177-34127642	HUVEC	blood vessel:	n/a	n/a
16	BCLAF1	chr11:34125659-34127536	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:34125707-34127851	GM19099	blood:	n/a	n/a
18	ATF2	chr11:34125882-34127364	H1-hESC	embryonic stem cell:	n/a	n/a
19	PML	chr11:34125199-34127890	GM12878	blood:	n/a	chr11:34127259-34127267
20	POLR2A	chr11:34125963-34128394	H1-neurons	neurons:	n/a	n/a
21	POLR2A	chr11:34125251-34126462	K562	blood:	n/a	n/a
22	POLR2A	chr11:34124039-34127882	K562	blood:	n/a	n/a
23	POLR2A	chr11:34123174-34128281	K562	blood:	n/a	n/a
24	MTA3	chr11:34126125-34127426	GM12878	blood:	n/a	n/a
25	POLR2A	chr11:34126168-34127585	GM12878	blood:	n/a	n/a
26	POLR2A	chr11:34125333-34127844	GM18505	blood:	n/a	n/a
27	POLR2A	chr11:34125212-34127919	GM12892	blood:	n/a	n/a
28	POLR2A	chr11:34125339-34127636	HepG2	liver:	n/a	n/a
29	POLR2A	chr11:34125410-34127668	GM18526	blood:	n/a	n/a
30	POLR2A	chr11:34124110-34127755	H1-hESC	embryonic stem cell:	n/a	n/a
31	POLR2A	chr11:34126050-34127735	HUVEC	blood vessel:	n/a	n/a
32	POLR2A	chr11:34121383-34128525	HepG2	liver:	n/a	n/a
33	PBX3	chr11:34126166-34127456	SK-N-SH	brain:	n/a	n/a
34	NFATC1	chr11:34125251-34127711	GM12878	blood:	n/a	n/a
35	CCNT2	chr11:34126075-34127968	K562	blood:	n/a	n/a
36	BCL3	chr11:34125289-34127627	A549	lung:	n/a	n/a
37	POLR2A	chr11:34126045-34127763	GM15510	blood:	n/a	n/a
38	TRIM28	chr11:34125649-34128063	K562	blood:	n/a	chr11:34127259-34127267
39	PML	chr11:34125205-34127939	K562	blood:	n/a	chr11:34127259-34127267
40	POLR2A	chr11:34125241-34127998	K562	blood:	n/a	n/a
41	POLR2A	chr11:34125298-34127702	HUVEC	blood vessel:	n/a	n/a
42	STAT5A	chr11:34126036-34127484	GM12878	blood:	n/a	n/a
43	POLR2A	chr11:34125299-34127687	SK-N-SH	brain:	n/a	n/a
44	POLR2A	chr11:34125968-34127811	GM19193	blood:	n/a	n/a
45	POLR2A	chr11:34125930-34127957	K562	blood:	n/a	n/a
46	NFYA	chr11:34126113-34127251	K562	blood:	n/a	n/a
47	POLR2A	chr11:34125710-34127413	HepG2	liver:	n/a	n/a
48	RELA	chr11:34126111-34127449	GM15510	blood:	n/a	n/a
49	TCF12	chr11:34125463-34127922	A549	lung:	n/a	chr11:34125470-34125477
50	NFIC	chr11:34126182-34127731	GM12878	blood:	n/a	chr11:34126691-34126719

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:34125543..34130810-chr11:34377372..34382966,13	MCF-7	breast:
2	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
3	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
4	chr11:34071305..34076629-chr11:34124370..34130035,10	MCF-7	breast:
5	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
6	chr11:34115146..34119310-chr11:34123587..34128957,8	K562	blood:
7	chr1:16481764..16482650-chr11:34125978..34126927,2	Hela-S3	cervix:
8	chr11:34106541..34110325-chr11:34122744..34126295,3	K562	blood:
9	chr11:34105212..34107740-chr11:34124553..34126894,2	MCF-7	breast:
10	chr11:34106106..34107608-chr11:34124928..34126628,2	K562	blood:

No data

Variant related genes	Relation type
NAT10	TF binding region
ENSG00000142627	Chromatin interaction
ENSG00000135387	Chromatin interaction
ENSG00000166016	Chromatin interaction

rs_ID	r²[population]
rs11605751	0.84[AFR][1000 genomes]
rs36006049	1.00[AFR][1000 genomes]
rs57975123	1.00[AFR][1000 genomes]
rs58487250	1.00[AFR][1000 genomes]
rs61596717	0.91[AFR][1000 genomes]
rs68136693	1.00[AFR][1000 genomes]
rs73486510	0.91[AFR][1000 genomes]
rs73486543	1.00[AFR][1000 genomes]
rs73497021	1.00[AFR][1000 genomes]
rs73497046	0.84[AFR][1000 genomes]
rs73497058	1.00[AFR][1000 genomes]
rs73497061	1.00[AFR][1000 genomes]
rs73499094	1.00[AFR][1000 genomes]
rs73500435	1.00[AFR][1000 genomes]
rs73500462	1.00[AFR][1000 genomes]
rs73500465	1.00[AFR][1000 genomes]
rs73500472	1.00[AFR][1000 genomes]
rs73500476	0.91[AFR][1000 genomes]
rs73500825	0.91[AFR][1000 genomes]
rs73500839	0.91[AFR][1000 genomes]
rs73500853	0.91[AFR][1000 genomes]
rs73500860	0.84[AFR][1000 genomes]
rs73501015	1.00[AFR][1000 genomes]
rs73501036	1.00[AFR][1000 genomes]
rs73501046	1.00[AFR][1000 genomes]
rs73501061	1.00[AFR][1000 genomes]
rs73501093	1.00[AFR][1000 genomes]
rs73501100	1.00[AFR][1000 genomes]

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34079000-34126600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:34083400-34126600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:34097200-34126200	Weak transcription	Stomach Mucosa	stomach
4	chr11:34111200-34126600	Weak transcription	Small Intestine	intestine
5	chr11:34112600-34126400	Weak transcription	Right Atrium	heart
6	chr11:34116600-34126400	Weak transcription	Aorta	Aorta
7	chr11:34116800-34126200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:34116800-34126600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:34117200-34126400	Weak transcription	Fetal Stomach	stomach
10	chr11:34118400-34126200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:34119000-34126200	Weak transcription	Fetal Brain Male	brain
12	chr11:34119400-34126400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:34120800-34126400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:34120800-34126400	Weak transcription	Right Ventricle	heart
15	chr11:34120800-34126600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:34120800-34126600	Weak transcription	Pancreas	Pancrea
17	chr11:34121000-34126400	Weak transcription	Esophagus	oesophagus
18	chr11:34121000-34126600	Weak transcription	Gastric	stomach
19	chr11:34121200-34126600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:34121600-34126400	Weak transcription	Spleen	Spleen
21	chr11:34121600-34126600	Weak transcription	Lung	lung
22	chr11:34122200-34126200	Weak transcription	Fetal Brain Female	brain
23	chr11:34122200-34126200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:34122200-34126400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr11:34122200-34126400	Weak transcription	Brain Germinal Matrix	brain
26	chr11:34122400-34126200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:34122400-34126400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:34122400-34126400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:34122400-34126400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:34122400-34126400	Weak transcription	Colonic Mucosa	Colon
31	chr11:34122400-34126600	Weak transcription	Ovary	ovary
32	chr11:34122400-34126600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:34122600-34126200	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:34123000-34126200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:34123000-34126200	Weak transcription	Brain Angular Gyrus	brain
36	chr11:34123000-34126200	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:34123000-34126200	Weak transcription	Fetal Heart	heart
38	chr11:34123000-34126400	Weak transcription	Left Ventricle	heart
39	chr11:34123000-34126400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:34123000-34126400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr11:34123200-34126200	Weak transcription	Brain Anterior Caudate	brain
42	chr11:34123400-34126200	Weak transcription	Brain Substantia Nigra	brain
43	chr11:34123400-34126200	Weak transcription	Placenta	Placenta
44	chr11:34123400-34126200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:34123400-34126200	Weak transcription	NHLF	lung
46	chr11:34123400-34126400	Weak transcription	Fetal Muscle Trunk	muscle
47	chr11:34123600-34126200	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:34123600-34126400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:34123800-34126200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:34123800-34126200	Weak transcription	Colon Smooth Muscle	Colon

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