Variant report

Variant	rs7350202
Chromosome Location	chr9:17651870-17651871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10756895	0.88[EUR][1000 genomes]
rs10810822	0.88[CEU][hapmap]
rs1536064	0.84[EUR][1000 genomes]
rs2147736	0.89[CEU][hapmap];0.88[EUR][1000 genomes]
rs2182084	0.89[CEU][hapmap];0.84[TSI][hapmap]
rs2182086	0.89[CEU][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes]
rs2182087	0.87[CEU][hapmap];0.83[CHD][hapmap];0.89[JPT][hapmap];0.93[EUR][1000 genomes]
rs2182090	0.89[CEU][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs2209434	0.88[EUR][1000 genomes]
rs2209435	0.89[CEU][hapmap]
rs3780234	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs3780235	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs3808713	0.81[CEU][hapmap]
rs3808718	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs3808723	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs3808726	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3808727	0.84[CHD][hapmap]
rs4418424	0.89[CEU][hapmap];0.89[TSI][hapmap]
rs4601434	0.81[CEU][hapmap];0.83[TSI][hapmap]
rs67576915	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7020158	0.87[CEU][hapmap];0.88[EUR][1000 genomes]
rs7021836	0.89[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs7031459	0.83[EUR][1000 genomes]
rs7036904	0.95[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs7847174	0.86[EUR][1000 genomes]
rs7856894	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs7862689	0.88[EUR][1000 genomes]
rs7866654	0.93[EUR][1000 genomes]
rs7866898	0.87[CEU][hapmap];0.92[EUR][1000 genomes]
rs7870919	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs7874762	0.81[CEU][hapmap]
rs7875763	0.89[CEU][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs961372	0.89[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv892674	chr9:17631186-17699981	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1016971	chr9:17648242-17720176	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv1021022	chr9:17649360-17723730	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7350202	IFNA8	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17648200-17652200	Enhancers	Hela-S3	cervix
2	chr9:17650600-17652200	Enhancers	Fetal Brain Male	brain
3	chr9:17650800-17652200	Enhancers	Fetal Brain Female	brain
4	chr9:17651200-17652000	Enhancers	Brain Germinal Matrix	brain
5	chr9:17651200-17652200	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links