Variant report

Variant	rs7350265
Chromosome Location	chr9:72187986-72187987
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10780527	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10780528	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10867825	0.88[ASN][1000 genomes]
rs11139338	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11139361	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1330334	0.92[ASN][1000 genomes]
rs1556211	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1854702	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1854703	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1967880	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1970017	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3927538	0.87[AMR][1000 genomes]
rs4744913	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4744914	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4744917	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744918	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4744919	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6559643	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7030393	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72719029	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7850006	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7853783	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7864173	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7871895	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72173800-72188400	Weak transcription	Fetal Lung	lung
2	chr9:72180400-72208400	Weak transcription	Gastric	stomach
3	chr9:72181000-72195000	Weak transcription	Left Ventricle	heart
4	chr9:72181200-72188400	Weak transcription	Liver	Liver
5	chr9:72181400-72193000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr9:72181800-72188000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:72183800-72189400	Enhancers	NH-A	brain
8	chr9:72184000-72188800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:72184800-72189800	Enhancers	HUVEC	blood vessel
10	chr9:72185200-72192800	Weak transcription	Brain Anterior Caudate	brain
11	chr9:72185400-72188400	Weak transcription	Fetal Heart	heart
12	chr9:72185400-72189400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr9:72185400-72194000	Weak transcription	Ovary	ovary
14	chr9:72185400-72195200	Weak transcription	Brain Germinal Matrix	brain
15	chr9:72185600-72193000	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:72186000-72188600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:72186200-72195000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:72186200-72200800	Weak transcription	HSMMtube	muscle
19	chr9:72186400-72188600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:72186800-72188000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr9:72186800-72188600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:72186800-72188600	Weak transcription	NHEK	skin
23	chr9:72186800-72189400	Enhancers	Fetal Muscle Leg	muscle
24	chr9:72187400-72188400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:72187400-72189400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr9:72187400-72189400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr9:72187400-72189400	Enhancers	Osteobl	bone
28	chr9:72187400-72204800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:72187600-72188400	Weak transcription	HSMM	muscle
30	chr9:72187600-72188600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr9:72187600-72189400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:72187800-72188200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:72187800-72188600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:72187800-72188600	Weak transcription	Fetal Brain Male	brain
35	chr9:72187800-72198600	Weak transcription	NHDF-Ad	bronchial

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