Variant report

Variant	rs73510831
Chromosome Location	chr6:101459234-101459235
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101452622..101455428-chr6:101458387..101460104,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10485300	0.87[EUR][1000 genomes]
rs10782325	0.80[EUR][1000 genomes]
rs17061229	0.87[EUR][1000 genomes]
rs4376359	0.80[EUR][1000 genomes]
rs55961746	0.87[EUR][1000 genomes]
rs61382658	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61647432	0.80[EUR][1000 genomes]
rs6905979	0.80[EUR][1000 genomes]
rs6915514	0.80[EUR][1000 genomes]
rs72610831	0.80[EUR][1000 genomes]
rs73508892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73508898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73508899	0.83[AFR][1000 genomes]
rs73510837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748969	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749035	0.80[EUR][1000 genomes]
rs7753454	0.80[EUR][1000 genomes]
rs7753811	0.80[EUR][1000 genomes]
rs817228	0.95[ASN][1000 genomes]
rs9322380	0.80[EUR][1000 genomes]
rs9390722	0.80[EUR][1000 genomes]
rs9390723	0.80[EUR][1000 genomes]
rs9399705	0.80[EUR][1000 genomes]
rs9399706	0.80[EUR][1000 genomes]
rs9485451	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9485453	0.80[EUR][1000 genomes]
rs9485455	0.80[EUR][1000 genomes]
rs9498480	0.83[EUR][1000 genomes]
rs9498481	0.83[EUR][1000 genomes]
rs9498482	0.83[EUR][1000 genomes]
rs9498484	0.80[EUR][1000 genomes]
rs9498485	0.80[EUR][1000 genomes]
rs9498488	0.80[EUR][1000 genomes]
rs9498489	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498490	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498491	0.80[EUR][1000 genomes]
rs9498507	0.90[ASN][1000 genomes]
rs9654621	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101458400-101459800	Enhancers	Fetal Thymus	thymus
2	chr6:101458400-101460000	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:101458600-101459600	Enhancers	Primary B cells from cord blood	blood
4	chr6:101458600-101459800	Flanking Active TSS	Dnd41	blood
5	chr6:101458600-101460000	Enhancers	Thymus	Thymus
6	chr6:101458800-101459600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
7	chr6:101458800-101459800	Enhancers	Fetal Intestine Small	intestine
8	chr6:101459000-101459400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:101459000-101459400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:101459000-101459400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:101459000-101459400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:101459000-101459400	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr6:101459000-101459400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:101459000-101459400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:101459000-101459400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:101459000-101459400	Active TSS	Duodenum Mucosa	Duodenum
17	chr6:101459000-101459400	Enhancers	GM12878-XiMat	blood
18	chr6:101459000-101459600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:101459000-101459600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:101459000-101459600	Active TSS	Hela-S3	cervix
21	chr6:101459000-101459800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:101459000-101459800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr6:101459000-101460000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr6:101459000-101461400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:101459200-101459400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr6:101459200-101459400	Flanking Active TSS	Liver	Liver
27	chr6:101459200-101459600	Active TSS	Primary T cells from cord blood	blood
28	chr6:101459200-101459600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr6:101459200-101459600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr6:101459200-101460000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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