Variant report

Variant	rs73511415
Chromosome Location	chr13:67810420-67810421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17082175	1.00[AMR][1000 genomes]
rs73509494	1.00[AMR][1000 genomes]
rs73509500	1.00[AMR][1000 genomes]
rs73509502	1.00[AMR][1000 genomes]
rs73511409	1.00[AMR][1000 genomes]
rs73511412	0.81[AFR][1000 genomes]
rs73511416	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67804400-67811400	Active TSS	Stomach Smooth Muscle	stomach
2	chr13:67805800-67811200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:67807200-67810800	Weak transcription	Brain Substantia Nigra	brain
4	chr13:67807600-67811000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:67809600-67812800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:67809800-67811000	Enhancers	A549	lung
7	chr13:67810000-67810800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr13:67810000-67810800	Weak transcription	Right Atrium	heart
9	chr13:67810000-67811200	Weak transcription	Adipose Nuclei	Adipose
10	chr13:67810400-67810800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:67810400-67811000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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