Variant report

Variant	rs73521132
Chromosome Location	chr11:70807576-70807577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11232452	0.82[EUR][1000 genomes]
rs11232477	0.82[EUR][1000 genomes]
rs11232508	0.82[EUR][1000 genomes]
rs11822742	0.82[EUR][1000 genomes]
rs11826649	0.82[EUR][1000 genomes]
rs3934693	0.82[EUR][1000 genomes]
rs4072326	0.82[EUR][1000 genomes]
rs4943820	0.82[EUR][1000 genomes]
rs4943871	0.82[EUR][1000 genomes]
rs55656100	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55690281	0.82[EUR][1000 genomes]
rs55712817	0.82[EUR][1000 genomes]
rs55788978	0.82[EUR][1000 genomes]
rs55836628	1.00[EUR][1000 genomes]
rs55897315	0.82[EUR][1000 genomes]
rs55928066	0.82[EUR][1000 genomes]
rs56162839	0.82[EUR][1000 genomes]
rs56220831	1.00[EUR][1000 genomes]
rs56255416	0.82[EUR][1000 genomes]
rs56368604	0.82[EUR][1000 genomes]
rs57007124	0.82[EUR][1000 genomes]
rs58661988	1.00[EUR][1000 genomes]
rs58984468	0.82[EUR][1000 genomes]
rs59894456	0.82[EUR][1000 genomes]
rs61037105	0.82[EUR][1000 genomes]
rs73521141	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7944885	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70795400-70809000	Weak transcription	Fetal Kidney	kidney
2	chr11:70795800-70814200	Weak transcription	Stomach Mucosa	stomach
3	chr11:70796000-70820000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:70796600-70812800	Strong transcription	HepG2	liver
5	chr11:70799200-70811000	Strong transcription	Fetal Intestine Small	intestine
6	chr11:70799200-70823400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:70799800-70831000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:70800000-70808800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr11:70800600-70809000	Weak transcription	NHLF	lung
10	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
11	chr11:70800800-70824400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr11:70801200-70824600	Strong transcription	Liver	Liver
13	chr11:70801400-70810400	Strong transcription	Fetal Stomach	stomach
14	chr11:70801600-70809400	Strong transcription	Fetal Intestine Large	intestine
15	chr11:70803600-70820200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:70804600-70808800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:70805000-70808800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:70805200-70809000	Weak transcription	A549	lung
19	chr11:70805400-70820000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:70805600-70808800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:70805600-70808800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:70805800-70819600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:70806000-70808800	Weak transcription	Lung	lung
24	chr11:70806000-70809000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:70806000-70820200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr11:70806200-70818000	Weak transcription	Placenta	Placenta
27	chr11:70806400-70808800	Weak transcription	Pancreas	Pancrea
28	chr11:70806400-70809000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr11:70806400-70809000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:70806400-70820400	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr11:70806600-70808600	Weak transcription	Gastric	stomach
32	chr11:70806800-70808400	Enhancers	HSMM	muscle
33	chr11:70807000-70808000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:70807000-70808800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:70807000-70808800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr11:70807000-70808800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:70807200-70808200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:70807200-70808200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:70807200-70808400	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:70807200-70808800	Enhancers	Fetal Brain Male	brain
41	chr11:70807400-70807600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr11:70807400-70808000	Bivalent Enhancer	Osteobl	bone
43	chr11:70807400-70808200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr11:70807400-70808200	Enhancers	HMEC	breast

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