Variant report

Variant	rs73523006
Chromosome Location	chr11:70842855-70842856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11820146	0.90[ASN][1000 genomes]
rs11822962	1.00[ASN][1000 genomes]
rs11827505	1.00[ASN][1000 genomes]
rs1336	1.00[ASN][1000 genomes]
rs34336930	0.84[ASN][1000 genomes]
rs4075045	1.00[ASN][1000 genomes]
rs57772484	1.00[ASN][1000 genomes]
rs58061852	1.00[ASN][1000 genomes]
rs58224946	1.00[ASN][1000 genomes]
rs59858246	1.00[ASN][1000 genomes]
rs73521160	0.87[AMR][1000 genomes]
rs73521172	1.00[ASN][1000 genomes]
rs73521173	1.00[ASN][1000 genomes]
rs73521175	1.00[ASN][1000 genomes]
rs73521178	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73521181	1.00[ASN][1000 genomes]
rs73521182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73521185	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73521197	1.00[ASN][1000 genomes]
rs73521200	1.00[ASN][1000 genomes]
rs73523004	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73523005	0.87[AMR][1000 genomes]
rs7927453	1.00[ASN][1000 genomes]
rs7938379	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
2	chr11:70824000-70861600	Weak transcription	A549	lung
3	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
4	chr11:70832200-70843000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr11:70832200-70843000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:70832200-70843400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:70832200-70843400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:70832200-70848400	Weak transcription	Gastric	stomach
9	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr11:70837800-70843400	Strong transcription	Fetal Intestine Small	intestine
13	chr11:70839000-70843800	Enhancers	HSMM	muscle
14	chr11:70839200-70843200	Strong transcription	Liver	Liver
15	chr11:70839200-70845400	Strong transcription	HepG2	liver
16	chr11:70840200-70843800	Enhancers	HSMMtube	muscle
17	chr11:70840400-70843600	Enhancers	Muscle Satellite Cultured Cells	--
18	chr11:70841000-70848600	Weak transcription	Pancreas	Pancrea
19	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:70841800-70843600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:70841800-70843600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr11:70841800-70851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:70842000-70843600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:70842200-70843800	Bivalent Enhancer	Fetal Muscle Leg	muscle
25	chr11:70842200-70844000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:70842400-70843800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
28	chr11:70842600-70851000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr11:70842800-70843000	Enhancers	Fetal Stomach	stomach
31	chr11:70842800-70843200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:70842800-70843800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:70842800-70843800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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