Variant report

Variant	rs73528860
Chromosome Location	chr11:71999741-71999742
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71999608..72001365-chr11:72019343..72020948,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162129	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1160142	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs17160018	0.87[ASN][1000 genomes]
rs17162130	0.80[ASN][1000 genomes]
rs17162141	0.80[ASN][1000 genomes]
rs2508200	0.85[ASN][1000 genomes]
rs2886351	0.80[ASN][1000 genomes]
rs4268536	0.80[ASN][1000 genomes]
rs4475949	0.80[ASN][1000 genomes]
rs4488227	0.80[ASN][1000 genomes]
rs58058345	0.87[ASN][1000 genomes]
rs58515298	0.89[ASN][1000 genomes]
rs58571741	0.89[ASN][1000 genomes]
rs7107393	0.97[EUR][1000 genomes]
rs7109307	0.87[ASN][1000 genomes]
rs7127051	0.97[EUR][1000 genomes]
rs730042	0.85[ASN][1000 genomes]
rs7927430	0.87[ASN][1000 genomes]
rs7938979	0.86[EUR][1000 genomes]
rs7939212	0.83[EUR][1000 genomes]
rs7940087	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71993800-72004800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:71994000-72004200	Weak transcription	HSMMtube	muscle
3	chr11:71994000-72004600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:71995400-72003200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:71995600-72028000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:71996200-72003800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:71997200-72003200	Weak transcription	Esophagus	oesophagus
8	chr11:71997200-72003200	Weak transcription	Pancreas	Pancrea
9	chr11:71997400-72003200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:71997400-72004800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr11:71997600-72003000	Weak transcription	Fetal Intestine Small	intestine
12	chr11:71997600-72003200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:71997800-72003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:71997800-72003200	Weak transcription	Fetal Brain Female	brain
15	chr11:71997800-72003200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr11:71997800-72003400	Weak transcription	Gastric	stomach
17	chr11:71997800-72004200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:71998000-72003200	Weak transcription	Primary T cells from cord blood	blood
19	chr11:71998000-72003200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:71998000-72003200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:71998000-72003400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:71998000-72003400	Weak transcription	Liver	Liver
23	chr11:71998000-72012200	Weak transcription	NH-A	brain
24	chr11:71998200-72003200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:71998200-72003200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:71998200-72003400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr11:71998600-72003200	Weak transcription	Fetal Muscle Leg	muscle
28	chr11:71998600-72003200	Weak transcription	NHLF	lung
29	chr11:71999200-72003200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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