Variant report

Variant	rs73528897
Chromosome Location	chr11:72032681-72032682
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72021267..72023615-chr11:72031503..72033339,2	K562	blood:
2	chr11:72032057..72034532-chr11:72036691..72039039,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12416741	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1783632	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1784257	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2508201	0.87[ASN][1000 genomes]
rs2508204	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2508861	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2508865	0.87[ASN][1000 genomes]
rs2508866	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs36049191	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs472837	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs487288	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs506041	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55723921	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56229279	0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs56333926	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57276029	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57291879	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57464210	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57614093	0.87[ASN][1000 genomes]
rs57669200	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58306819	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58489620	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58753751	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590732	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs59427981	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59509230	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59612321	0.87[ASN][1000 genomes]
rs59755180	0.89[EUR][1000 genomes]
rs59980097	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60024067	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60849224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61563240	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs650834	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7108974	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7116854	0.87[ASN][1000 genomes]
rs7130652	0.87[ASN][1000 genomes]
rs73528886	0.87[ASN][1000 genomes]
rs73528892	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7952074	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72001000-72039800	Weak transcription	Psoas Muscle	Psoas
2	chr11:72002800-72044600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:72003200-72033600	Strong transcription	Dnd41	blood
4	chr11:72003200-72034200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
5	chr11:72003200-72034400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:72003200-72041800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr11:72003200-72041800	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:72006000-72034600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:72006200-72040000	Weak transcription	Stomach Mucosa	stomach
10	chr11:72008400-72044600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:72012800-72070600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:72013600-72040200	Weak transcription	Fetal Kidney	kidney
13	chr11:72013600-72040800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr11:72014600-72045000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:72020400-72033400	Strong transcription	Primary B cells from peripheral blood	blood
16	chr11:72020400-72039600	Weak transcription	Fetal Lung	lung
17	chr11:72020400-72039600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:72021000-72037200	Weak transcription	Osteobl	bone
19	chr11:72021200-72033200	Strong transcription	Fetal Stomach	stomach
20	chr11:72021800-72037400	Weak transcription	HMEC	breast
21	chr11:72024600-72042200	Weak transcription	Small Intestine	intestine
22	chr11:72025600-72032800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:72025600-72054000	Weak transcription	GM12878-XiMat	blood
24	chr11:72026200-72033200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:72026200-72044600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:72026600-72032800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:72026600-72033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:72026600-72036600	Strong transcription	Primary T cells from cord blood	blood
29	chr11:72026600-72037800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:72026600-72067400	Weak transcription	Fetal Intestine Large	intestine
31	chr11:72026800-72036800	Weak transcription	Fetal Thymus	thymus
32	chr11:72026800-72044200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:72027000-72037400	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr11:72027000-72041400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr11:72027000-72044800	Weak transcription	Colonic Mucosa	Colon
36	chr11:72027200-72033600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr11:72027200-72045000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:72027400-72039400	Weak transcription	Duodenum Mucosa	Duodenum
39	chr11:72027600-72060600	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:72027800-72038200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:72027800-72044200	Weak transcription	Thymus	Thymus
42	chr11:72028000-72034200	Strong transcription	Fetal Muscle Leg	muscle
43	chr11:72028000-72039800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:72028000-72045200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr11:72028200-72037400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:72028200-72039400	Weak transcription	Colon Smooth Muscle	Colon
47	chr11:72028200-72042800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr11:72028200-72044600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:72028200-72044800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:72028400-72035600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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