Variant report

Variant	rs73530756
Chromosome Location	chr11:72101747-72101748
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72096231..72097913-chr11:72100052..72101859,2	K562	blood:
2	chr11:72100008..72102781-chr11:72103941..72105865,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10501410	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11823672	0.82[EUR][1000 genomes]
rs12416804	0.91[EUR][1000 genomes]
rs12418637	0.85[EUR][1000 genomes]
rs12421674	0.91[EUR][1000 genomes]
rs17162126	0.91[EUR][1000 genomes]
rs34147990	0.83[EUR][1000 genomes]
rs3750906	0.80[EUR][1000 genomes]
rs474629	0.83[EUR][1000 genomes]
rs504217	0.83[EUR][1000 genomes]
rs55721826	0.80[EUR][1000 genomes]
rs55930012	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56076328	0.82[EUR][1000 genomes]
rs56171963	0.82[EUR][1000 genomes]
rs57928845	0.86[EUR][1000 genomes]
rs58044536	0.80[EUR][1000 genomes]
rs58941166	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58945323	0.91[EUR][1000 genomes]
rs60081894	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60712691	0.93[ASN][1000 genomes]
rs61036532	0.80[EUR][1000 genomes]
rs7124336	0.83[EUR][1000 genomes]
rs73530718	0.91[EUR][1000 genomes]
rs73530724	0.91[EUR][1000 genomes]
rs73530754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73530785	0.84[EUR][1000 genomes]
rs73532667	0.83[EUR][1000 genomes]
rs7940062	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72065000-72110800	Weak transcription	Hela-S3	cervix
2	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr11:72073400-72103200	Weak transcription	K562	blood
4	chr11:72090200-72103200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:72090800-72105400	Weak transcription	Left Ventricle	heart
7	chr11:72091400-72106600	Weak transcription	Aorta	Aorta
8	chr11:72091400-72106600	Weak transcription	Ovary	ovary
9	chr11:72091400-72109600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
12	chr11:72093800-72109400	Weak transcription	Pancreas	Pancrea
13	chr11:72095200-72102600	Weak transcription	HepG2	liver
14	chr11:72095200-72103000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:72095200-72103200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
17	chr11:72095600-72106600	Weak transcription	Fetal Heart	heart
18	chr11:72095800-72110600	Weak transcription	Dnd41	blood
19	chr11:72096200-72108000	Weak transcription	Primary B cells from cord blood	blood
20	chr11:72096200-72110600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr11:72096400-72105600	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:72098200-72108800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:72099000-72106600	Weak transcription	Right Ventricle	heart
24	chr11:72099200-72102400	Enhancers	GM12878-XiMat	blood
25	chr11:72099200-72103800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:72099200-72105400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:72099200-72105400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:72099200-72105600	Weak transcription	Esophagus	oesophagus
29	chr11:72099200-72105600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:72099200-72105800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:72099200-72106800	Weak transcription	Adipose Nuclei	Adipose
32	chr11:72099200-72110600	Weak transcription	HSMM	muscle
33	chr11:72099200-72110800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
36	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle
40	chr11:72099200-72112800	Weak transcription	Lung	lung
41	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
43	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:72100000-72102600	Strong transcription	Primary T cells from cord blood	blood
47	chr11:72100000-72103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:72100000-72103000	Weak transcription	Spleen	Spleen
49	chr11:72100000-72109200	Weak transcription	Osteobl	bone
50	chr11:72100200-72111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links