Variant report

Variant	rs73530762
Chromosome Location	chr11:72110834-72110835
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:72108026..72111129-chr11:72112803..72115357,3	MCF-7	breast:
2	chr11:71813989..71816363-chr11:72110601..72112826,2	K562	blood:
3	chr11:72091599..72093441-chr11:72109431..72111887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000238768	Chromatin interaction
ENSG00000149357	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61620471	0.89[AFR][1000 genomes]
rs73530765	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv1000322	chr11:72109327-72116806	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72069400-72111400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr11:72090400-72123000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:72091400-72111400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:72091600-72119200	Weak transcription	Thymus	Thymus
5	chr11:72095200-72112800	Weak transcription	Fetal Stomach	stomach
6	chr11:72099200-72111200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:72099200-72111400	Weak transcription	HSMMtube	muscle
8	chr11:72099200-72111600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:72099200-72111600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:72099200-72112800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:72099200-72112800	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:72099200-72112800	Weak transcription	Lung	lung
13	chr11:72099200-72115000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:72099200-72115600	Weak transcription	NHDF-Ad	bronchial
15	chr11:72099200-72122800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:72099600-72125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr11:72099600-72125000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:72100200-72111400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:72100400-72117400	Weak transcription	HMEC	breast
20	chr11:72101400-72111600	Weak transcription	Gastric	stomach
21	chr11:72102000-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:72102400-72111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:72102600-72112600	Weak transcription	Fetal Intestine Small	intestine
24	chr11:72103400-72111400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:72103400-72120000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:72103600-72111600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:72103600-72111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:72103600-72116000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:72104000-72111000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:72104200-72111400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr11:72104200-72111400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:72104200-72111600	Weak transcription	Spleen	Spleen
33	chr11:72104200-72113600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:72104400-72111800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:72105000-72122200	Weak transcription	GM12878-XiMat	blood
36	chr11:72105400-72124800	Weak transcription	A549	lung
37	chr11:72106000-72115800	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr11:72106200-72111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:72106200-72112400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr11:72106200-72113200	Weak transcription	Psoas Muscle	Psoas
41	chr11:72106200-72113600	Weak transcription	NHEK	skin
42	chr11:72106200-72121200	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr11:72106200-72121800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:72106400-72111600	Weak transcription	Liver	Liver
45	chr11:72106600-72111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:72106800-72112800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:72106800-72136800	Weak transcription	Esophagus	oesophagus
48	chr11:72106800-72136800	Weak transcription	NHLF	lung
49	chr11:72107000-72111400	Weak transcription	Adipose Nuclei	Adipose
50	chr11:72107000-72111600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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