Variant report

Variant	rs73532391
Chromosome Location	chr11:70998714-70998715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70959273..70962056-chr11:70997227..71000001,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs55743867	0.83[AFR][1000 genomes]
rs55805348	0.81[AFR][1000 genomes]
rs55863521	0.86[AFR][1000 genomes]
rs55929954	0.83[AFR][1000 genomes]
rs56100131	0.84[AFR][1000 genomes]
rs56705610	0.83[AFR][1000 genomes]
rs56966971	0.86[AFR][1000 genomes]
rs56967953	0.80[AFR][1000 genomes]
rs57009928	0.83[AFR][1000 genomes]
rs57063205	0.83[AFR][1000 genomes]
rs58360857	0.83[AFR][1000 genomes]
rs58854299	0.80[AFR][1000 genomes]
rs59147071	0.86[AFR][1000 genomes]
rs59209313	0.86[AFR][1000 genomes]
rs59439599	0.86[AFR][1000 genomes]
rs59444222	0.80[AFR][1000 genomes]
rs60092825	0.83[AFR][1000 genomes]
rs60504655	0.86[AFR][1000 genomes]
rs60552266	0.83[AFR][1000 genomes]
rs60599873	0.83[AFR][1000 genomes]
rs73532375	0.83[AFR][1000 genomes]
rs73532387	0.86[AFR][1000 genomes]
rs73532392	0.86[AFR][1000 genomes]
rs73532402	0.86[AFR][1000 genomes]
rs73534114	0.86[AFR][1000 genomes]
rs73534119	0.86[AFR][1000 genomes]
rs73534121	0.86[AFR][1000 genomes]
rs73534124	0.86[AFR][1000 genomes]
rs73534125	0.84[AFR][1000 genomes]
rs73534129	0.86[AFR][1000 genomes]
rs73534130	0.86[AFR][1000 genomes]
rs73534131	0.86[AFR][1000 genomes]
rs73534133	0.86[AFR][1000 genomes]
rs73534144	0.83[AFR][1000 genomes]
rs73534148	0.83[AFR][1000 genomes]
rs73536025	0.83[AFR][1000 genomes]
rs73536027	0.83[AFR][1000 genomes]
rs73536029	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70992000-70999600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:70993000-70999200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:70995200-70998800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:70995600-70998800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70997000-70999600	Enhancers	NHDF-Ad	bronchial
6	chr11:70997200-70999200	Enhancers	NHLF	lung
7	chr11:70997400-70998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:70997400-70998800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:70997400-70999000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:70997400-70999400	Enhancers	Osteobl	bone
11	chr11:70997400-70999600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:70997400-70999600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:70997600-70998800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:70997600-70998800	Flanking Active TSS	NHEK	skin
15	chr11:70997800-70998800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr11:70997800-70998800	Enhancers	Adipose Nuclei	Adipose
17	chr11:70997800-70998800	Enhancers	Brain Cingulate Gyrus	brain
18	chr11:70997800-70998800	Enhancers	Duodenum Mucosa	Duodenum
19	chr11:70997800-70998800	Enhancers	Fetal Lung	lung
20	chr11:70997800-70998800	Enhancers	Fetal Muscle Trunk	muscle
21	chr11:70997800-70998800	Enhancers	Fetal Stomach	stomach
22	chr11:70998000-70998800	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr11:70998000-70999200	Enhancers	HSMM	muscle
24	chr11:70998000-70999800	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:70998200-70998800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr11:70998200-70998800	Enhancers	Stomach Mucosa	stomach
27	chr11:70998200-70998800	Flanking Active TSS	A549	lung
28	chr11:70998200-70999400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:70998400-70998800	Flanking Active TSS	HMEC	breast
30	chr11:70998400-70998800	Enhancers	HSMMtube	muscle
31	chr11:70998400-70998800	Flanking Active TSS	NH-A	brain
32	chr11:70998400-71009200	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr11:70998600-70998800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:70998600-70998800	Enhancers	Stomach Smooth Muscle	stomach
35	chr11:70998600-70999200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:70998600-70999200	Enhancers	Hela-S3	cervix
37	chr11:70998600-70999400	Weak transcription	Fetal Kidney	kidney
38	chr11:70998600-71005000	Weak transcription	Esophagus	oesophagus
39	chr11:70998600-71010600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea

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