Variant report

Variant	rs73532622
Chromosome Location	chr8:10555540-10555541
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10553523..10556097-chr8:10561265..10564003,2	K562	blood:
2	chr8:10553813..10555777-chr8:10556607..10558383,2	K562	blood:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10090558	0.87[ASN][1000 genomes]
rs10094968	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10097577	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10098956	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10099100	0.82[ASN][1000 genomes]
rs10103202	0.87[ASN][1000 genomes]
rs10107820	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10110723	0.82[ASN][1000 genomes]
rs10216539	0.80[ASN][1000 genomes]
rs1139066	0.82[ASN][1000 genomes]
rs1139843	0.82[ASN][1000 genomes]
rs11784335	0.82[ASN][1000 genomes]
rs11990311	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12680711	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28463918	0.80[ASN][1000 genomes]
rs28488675	0.87[ASN][1000 genomes]
rs28548758	0.87[ASN][1000 genomes]
rs28665435	0.80[ASN][1000 genomes]
rs34043696	0.80[ASN][1000 genomes]
rs58772184	0.82[ASN][1000 genomes]
rs59276210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60270701	0.93[ASN][1000 genomes]
rs60410697	0.93[ASN][1000 genomes]
rs60672851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60837490	0.87[ASN][1000 genomes]
rs61742975	0.85[ASN][1000 genomes]
rs6601505	1.00[ASN][1000 genomes]
rs6601507	1.00[ASN][1000 genomes]
rs6601508	1.00[ASN][1000 genomes]
rs6991320	0.80[ASN][1000 genomes]
rs7002378	0.86[ASN][1000 genomes]
rs7003456	0.86[ASN][1000 genomes]
rs7006325	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73530796	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73532605	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73532619	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73532620	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73536579	0.93[ASN][1000 genomes]
rs73541440	0.86[ASN][1000 genomes]
rs73541442	0.86[ASN][1000 genomes]
rs73541445	0.86[ASN][1000 genomes]
rs73541496	0.87[ASN][1000 genomes]
rs7815184	0.80[ASN][1000 genomes]
rs7820334	0.93[ASN][1000 genomes]
rs7822666	0.93[ASN][1000 genomes]
rs7828426	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
7	nsv515898	chr8:10530037-10557407	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv527184	chr8:10530037-10589913	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv465463	chr8:10535826-10567630	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	nsv610272	chr8:10535826-10567630	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	nsv1028266	chr8:10537081-10586112	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv1034829	chr8:10537081-10591896	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv465464	chr8:10537940-10565263	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv610273	chr8:10537940-10565263	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10554800-10556000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:10555000-10557800	Enhancers	Spleen	Spleen
3	chr8:10555200-10555600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:10555200-10555600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:10555400-10555600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:10555400-10555600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr8:10555400-10556800	Enhancers	Esophagus	oesophagus
8	chr8:10555400-10557200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:10555400-10557200	Enhancers	HMEC	breast
10	chr8:10555400-10557400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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