Variant report

Variant	rs73532651
Chromosome Location	chr11:72157326-72157327
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17162091	0.84[ASN][1000 genomes]
rs17847219	0.84[ASN][1000 genomes]
rs2365379	0.85[ASN][1000 genomes]
rs55888146	0.85[ASN][1000 genomes]
rs55970551	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55989089	0.85[ASN][1000 genomes]
rs57191897	0.81[ASN][1000 genomes]
rs57275811	0.96[ASN][1000 genomes]
rs59755180	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs60127404	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60549044	0.85[ASN][1000 genomes]
rs7115684	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7122350	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714548	0.84[ASN][1000 genomes]
rs73532653	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73532655	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73532669	0.95[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7941873	0.83[ASN][1000 genomes]
rs7947973	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv2762916	chr11:72147875-72160112	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv897910	chr11:72154529-72281884	Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72150800-72158000	Weak transcription	Hela-S3	cervix
2	chr11:72153200-72158400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr11:72153400-72158200	Weak transcription	K562	blood
4	chr11:72154400-72158200	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:72156400-72158400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:72156600-72158000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:72156600-72158200	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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