Variant report

Variant	rs73539337
Chromosome Location	chr8:10851333-10851334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10095695	1.00[AMR][1000 genomes]
rs10096326	1.00[AMR][1000 genomes]
rs10097387	1.00[AMR][1000 genomes]
rs10100837	1.00[AMR][1000 genomes]
rs10103361	1.00[AMR][1000 genomes]
rs10106007	1.00[AMR][1000 genomes]
rs10106157	1.00[AMR][1000 genomes]
rs10106838	1.00[AMR][1000 genomes]
rs10107951	1.00[AMR][1000 genomes]
rs10109455	1.00[AMR][1000 genomes]
rs10109542	1.00[AMR][1000 genomes]
rs10481453	1.00[AMR][1000 genomes]
rs17152810	1.00[AMR][1000 genomes]
rs17152846	1.00[AMR][1000 genomes]
rs17152847	1.00[AMR][1000 genomes]
rs17152852	1.00[AMR][1000 genomes]
rs17152856	1.00[AMR][1000 genomes]
rs28601819	1.00[AMR][1000 genomes]
rs4401812	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4415276	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56759377	1.00[AMR][1000 genomes]
rs57911758	1.00[AMR][1000 genomes]
rs58893927	1.00[AMR][1000 genomes]
rs60859757	1.00[AMR][1000 genomes]
rs61484474	1.00[AMR][1000 genomes]
rs61524162	1.00[AMR][1000 genomes]
rs73539338	0.93[AFR][1000 genomes]
rs73539361	1.00[AMR][1000 genomes]
rs73539402	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541207	1.00[AMR][1000 genomes]
rs73541222	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73541254	1.00[AMR][1000 genomes]
rs73543362	1.00[AMR][1000 genomes]
rs73543365	1.00[AMR][1000 genomes]
rs73545491	1.00[AMR][1000 genomes]
rs7814341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10850200-10851400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:10850400-10851400	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr8:10850800-10852000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr8:10850800-10852000	Enhancers	Fetal Heart	heart
5	chr8:10851000-10855600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:10851200-10851400	Enhancers	Brain Hippocampus Middle	brain
7	chr8:10851200-10854800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:10851200-10855200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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