Variant report

Variant	rs73539367
Chromosome Location	chr8:10859746-10859747
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10086171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10090729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10092802	1.00[EUR][1000 genomes]
rs10093392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10096824	1.00[EUR][1000 genomes]
rs10102909	1.00[EUR][1000 genomes]
rs10111601	1.00[EUR][1000 genomes]
rs11250109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11994349	1.00[EUR][1000 genomes]
rs11997437	1.00[EUR][1000 genomes]
rs13439107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654412	1.00[EUR][1000 genomes]
rs28693632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4401811	1.00[AMR][1000 genomes]
rs4452763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57240497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58810357	1.00[EUR][1000 genomes]
rs60363768	1.00[EUR][1000 genomes]
rs73539350	1.00[EUR][1000 genomes]
rs73539359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73539395	1.00[EUR][1000 genomes]
rs73541205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73541234	1.00[AFR][1000 genomes]
rs9657543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv3339026	chr8:10858742-10862940	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10856200-10864800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:10858400-10860200	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr8:10859000-10859800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:10859200-10859800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:10859200-10860000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:10859200-10860000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:10859200-10860000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr8:10859200-10860200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr8:10859200-10860200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:10859200-10860200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr8:10859200-10860200	Enhancers	Esophagus	oesophagus
12	chr8:10859200-10860400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:10859200-10860400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr8:10859400-10860000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:10859400-10865200	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
17	chr8:10859600-10859800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr8:10859600-10860000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr8:10859600-10860200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:10859600-10860400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr8:10859600-10860600	Enhancers	Brain Germinal Matrix	brain

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