Variant report

Variant	rs73539395
Chromosome Location	chr8:10865433-10865434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086171	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10090729	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10092587	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10092802	1.00[EUR][1000 genomes]
rs10093392	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10096824	1.00[EUR][1000 genomes]
rs10102909	1.00[EUR][1000 genomes]
rs10111601	1.00[EUR][1000 genomes]
rs11250109	1.00[EUR][1000 genomes]
rs11994349	1.00[EUR][1000 genomes]
rs11997437	1.00[EUR][1000 genomes]
rs13439107	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28654412	1.00[EUR][1000 genomes]
rs28693632	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4452763	1.00[EUR][1000 genomes]
rs57240497	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58810357	1.00[EUR][1000 genomes]
rs60363768	1.00[EUR][1000 genomes]
rs73539350	1.00[EUR][1000 genomes]
rs73539359	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73539366	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73539367	1.00[EUR][1000 genomes]
rs73541205	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73541210	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9657543	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10859400-10872200	Weak transcription	Brain Angular Gyrus	brain
2	chr8:10864800-10865600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr8:10864800-10865600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:10864800-10865800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr8:10864800-10865800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr8:10864800-10865800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:10865000-10865800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:10865000-10866400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10865200-10866000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:10865200-10870400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr8:10865400-10870400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:10865400-10870600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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