Variant report
| Variant | rs73541296 |
|---|---|
| Chromosome Location | chr8:10899702-10899703 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10102241 | 0.90[ASN][1000 genomes] |
| rs11996027 | 0.82[ASN][1000 genomes] |
| rs12335200 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17152785 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17152791 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17152793 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17152795 | 1.00[ASN][1000 genomes] |
| rs17155406 | 0.90[ASN][1000 genomes] |
| rs35539607 | 0.90[ASN][1000 genomes] |
| rs36088662 | 0.90[ASN][1000 genomes] |
| rs4141827 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56665484 | 0.90[ASN][1000 genomes] |
| rs59008721 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60039934 | 0.82[ASN][1000 genomes] |
| rs60514110 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60680986 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61027371 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6601548 | 0.90[ASN][1000 genomes] |
| rs6601549 | 0.90[ASN][1000 genomes] |
| rs7015045 | 0.90[ASN][1000 genomes] |
| rs73541252 | 0.90[ASN][1000 genomes] |
| rs73541270 | 1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs73541286 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73541293 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73541300 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73541301 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1035072 | chr8:10819444-11480692 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv539473 | chr8:10819444-11480692 | Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 3 | nsv1022434 | chr8:10866242-10916523 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:10889800-10910800 | Weak transcription | HSMMtube | muscle |
| 2 | chr8:10897400-10905600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
