Variant report

Variant	rs73542533
Chromosome Location	chr8:10614068-10614069
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:10613644..10615982-chr8:10616006..10618005,2	MCF-7	breast:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10096939	0.90[ASN][1000 genomes]
rs10099100	0.85[ASN][1000 genomes]
rs10110723	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10481452	0.90[ASN][1000 genomes]
rs10503411	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10503412	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1078543	1.00[ASN][1000 genomes]
rs1139066	0.85[ASN][1000 genomes]
rs1139843	0.85[ASN][1000 genomes]
rs11774457	0.83[AMR][1000 genomes]
rs11778578	0.90[ASN][1000 genomes]
rs11779090	0.90[ASN][1000 genomes]
rs11782490	0.81[AMR][1000 genomes]
rs11783803	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11784335	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13250710	0.95[ASN][1000 genomes]
rs17152366	0.95[ASN][1000 genomes]
rs17152410	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17152412	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17152542	0.81[AMR][1000 genomes]
rs17774023	0.95[ASN][1000 genomes]
rs2163381	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2409664	0.90[ASN][1000 genomes]
rs28544530	0.83[AMR][1000 genomes]
rs28675255	0.88[AMR][1000 genomes]
rs2898250	0.95[ASN][1000 genomes]
rs4240668	0.95[ASN][1000 genomes]
rs4840514	1.00[ASN][1000 genomes]
rs4840518	0.81[AMR][1000 genomes]
rs4841440	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4841449	0.88[AMR][1000 genomes]
rs57689233	0.81[AMR][1000 genomes]
rs57868806	0.81[AMR][1000 genomes]
rs58297791	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58772184	0.85[ASN][1000 genomes]
rs6984094	0.90[ASN][1000 genomes]
rs7008259	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7350075	0.95[ASN][1000 genomes]
rs7350124	1.00[ASN][1000 genomes]
rs73531553	0.81[AMR][1000 genomes]
rs73531554	0.81[AMR][1000 genomes]
rs73544348	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73546269	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7813875	0.81[AMR][1000 genomes]
rs7836178	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs891560	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1022582	chr8:10571218-10636162	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv539468	chr8:10571218-10636162	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1026802	chr8:10576444-10754489	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv539469	chr8:10576444-10754489	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	nsv1017836	chr8:10591801-10803617	Enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1034988	chr8:10591801-10804243	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
10	nsv519768	chr8:10600254-10691993	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv1024806	chr8:10605438-10662555	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831232	chr8:10606053-10774948	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
13	nsv1031709	chr8:10610545-10657726	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	esv2764105	chr8:10610557-10657726	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv519376	chr8:10611708-10691993	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10609600-10616200	Weak transcription	Primary T cells from cord blood	blood
2	chr8:10610000-10621400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:10610400-10614200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:10610600-10620400	Weak transcription	HepG2	liver
5	chr8:10610800-10622200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:10610800-10662000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:10611200-10624400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr8:10612600-10617600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:10612600-10621600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:10612800-10621600	Weak transcription	Spleen	Spleen
11	chr8:10613200-10622600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:10613400-10621600	Weak transcription	Aorta	Aorta
13	chr8:10613600-10614800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:10613600-10614800	Enhancers	HMEC	breast
15	chr8:10613600-10618400	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr8:10613600-10618800	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:10613800-10617800	Weak transcription	Ovary	ovary
18	chr8:10614000-10614800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr8:10614000-10614800	Enhancers	Esophagus	oesophagus
20	chr8:10614000-10614800	Enhancers	Placenta	Placenta

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