Variant report

Variant	rs73543365
Chromosome Location	chr8:10920805-10920806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10094620	1.00[AMR][1000 genomes]
rs10095695	1.00[AMR][1000 genomes]
rs10095840	1.00[AMR][1000 genomes]
rs10096326	1.00[AMR][1000 genomes]
rs10097387	1.00[AMR][1000 genomes]
rs10100837	1.00[AMR][1000 genomes]
rs10103361	1.00[AMR][1000 genomes]
rs10105182	1.00[AMR][1000 genomes]
rs10106007	1.00[AMR][1000 genomes]
rs10106157	1.00[AMR][1000 genomes]
rs10106838	1.00[AMR][1000 genomes]
rs10107951	1.00[AMR][1000 genomes]
rs10109455	1.00[AMR][1000 genomes]
rs10109542	1.00[AMR][1000 genomes]
rs10481453	1.00[AMR][1000 genomes]
rs17152810	1.00[AMR][1000 genomes]
rs17152846	1.00[AMR][1000 genomes]
rs17152847	1.00[AMR][1000 genomes]
rs17152852	1.00[AMR][1000 genomes]
rs17152856	1.00[AMR][1000 genomes]
rs28398187	1.00[AMR][1000 genomes]
rs28530758	1.00[AMR][1000 genomes]
rs28588681	1.00[AMR][1000 genomes]
rs28601819	1.00[AMR][1000 genomes]
rs4401812	1.00[AMR][1000 genomes]
rs4415276	1.00[AMR][1000 genomes]
rs56021916	1.00[AMR][1000 genomes]
rs56387861	1.00[AMR][1000 genomes]
rs56759377	1.00[AMR][1000 genomes]
rs57861728	1.00[AMR][1000 genomes]
rs57911758	1.00[AMR][1000 genomes]
rs58893927	1.00[AMR][1000 genomes]
rs60530116	1.00[AMR][1000 genomes]
rs60859757	1.00[AMR][1000 genomes]
rs61484474	1.00[AMR][1000 genomes]
rs61524162	1.00[AMR][1000 genomes]
rs7010804	1.00[AMR][1000 genomes]
rs7015231	1.00[AMR][1000 genomes]
rs73530537	1.00[AMR][1000 genomes]
rs73530569	1.00[AMR][1000 genomes]
rs73530600	1.00[AMR][1000 genomes]
rs73539337	1.00[AMR][1000 genomes]
rs73539361	1.00[AMR][1000 genomes]
rs73539402	1.00[AMR][1000 genomes]
rs73541207	1.00[AMR][1000 genomes]
rs73541222	1.00[AMR][1000 genomes]
rs73541224	1.00[AMR][1000 genomes]
rs73541227	1.00[AMR][1000 genomes]
rs73541254	1.00[AMR][1000 genomes]
rs73543362	1.00[AMR][1000 genomes]
rs73545491	1.00[AMR][1000 genomes]
rs73665013	1.00[AMR][1000 genomes]
rs7814341	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10917000-10926000	Weak transcription	Gastric	stomach
2	chr8:10917400-10923400	Weak transcription	Psoas Muscle	Psoas
3	chr8:10917400-10923400	Weak transcription	Right Atrium	heart
4	chr8:10917600-10921400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:10917600-10923600	Weak transcription	Brain Angular Gyrus	brain
6	chr8:10917800-10924400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:10918000-10925000	Weak transcription	Brain Anterior Caudate	brain
8	chr8:10918200-10921200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:10918200-10924200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:10918800-10922000	Enhancers	Brain Germinal Matrix	brain
11	chr8:10919000-10921400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:10919000-10921400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:10919400-10921200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:10919400-10922000	Enhancers	Fetal Muscle Leg	muscle
15	chr8:10919600-10921600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:10919600-10924200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:10919800-10921400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:10919800-10921400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr8:10919800-10921600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr8:10919800-10923200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:10919800-10924000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:10920000-10921400	Weak transcription	Brain Substantia Nigra	brain
23	chr8:10920000-10923200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:10920000-10924400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:10920200-10921400	Weak transcription	HSMMtube	muscle
26	chr8:10920400-10921000	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr8:10920400-10921600	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:10920400-10923200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:10920600-10921000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr8:10920800-10921600	Enhancers	HSMM	muscle

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