Variant report

Variant	rs735443
Chromosome Location	chr7:104524985-104524986
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104523544..104525271-chr7:104558660..104559768,6	MCF-7	breast:
2	chr7:104523003..104525584-chr7:105230453..105233041,2	K562	blood:
3	chr7:104523014..104525633-chr7:104652582..104654103,2	MCF-7	breast:
4	chr7:104523347..104526293-chr7:104526937..104529454,4	K562	blood:
5	chr7:104523942..104525943-chr7:104535712..104537774,2	K562	blood:
6	chr7:104524458..104526068-chr7:104657025..104659232,2	K562	blood:

Variant related genes	Relation type
ENSG00000228393	Chromatin interaction
ENSG00000185055	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10247369	0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10808135	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667927	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13232695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2041830	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs2214083	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2430483	0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs2470934	0.87[ASN][1000 genomes]
rs2891785	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34477839	0.90[EUR][1000 genomes]
rs3815553	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs62485455	0.89[EUR][1000 genomes]
rs6950960	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831086	chr7:104422503-104596766	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv981792	chr7:104524351-104538104	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104523800-104525000	Enhancers	Fetal Stomach	stomach
2	chr7:104523800-104526600	Enhancers	Fetal Muscle Leg	muscle
3	chr7:104524000-104525000	Enhancers	Placenta	Placenta
4	chr7:104524000-104525400	Enhancers	Brain Substantia Nigra	brain
5	chr7:104524000-104525400	Enhancers	Fetal Lung	lung
6	chr7:104524200-104525000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:104524200-104525000	Enhancers	Liver	Liver
8	chr7:104524200-104525000	Enhancers	Fetal Muscle Trunk	muscle
9	chr7:104524200-104531800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:104524400-104525000	Enhancers	Pancreas	Pancrea
11	chr7:104524400-104525000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr7:104524400-104525800	ZNF genes & repeats	GM12878-XiMat	blood
13	chr7:104524600-104525000	Enhancers	Fetal Heart	heart
14	chr7:104524600-104531800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:104524600-104532200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:104524800-104525000	Active TSS	Brain Hippocampus Middle	brain
17	chr7:104524800-104525000	Enhancers	Colon Smooth Muscle	Colon
18	chr7:104524800-104525000	Enhancers	Fetal Intestine Small	intestine
19	chr7:104524800-104525000	Enhancers	Stomach Mucosa	stomach
20	chr7:104524800-104525000	Enhancers	K562	blood
21	chr7:104524800-104525000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr7:104524800-104525400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr7:104524800-104525600	Enhancers	Duodenum Mucosa	Duodenum
24	chr7:104524800-104525600	Enhancers	Fetal Intestine Large	intestine
25	chr7:104524800-104526000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:104524800-104527000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:104524800-104527400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:104524800-104530600	Weak transcription	Right Atrium	heart
29	chr7:104524800-104534600	Weak transcription	Fetal Kidney	kidney
30	chr7:104524800-104535200	Weak transcription	Colonic Mucosa	Colon
31	chr7:104524800-104540800	Weak transcription	Brain Anterior Caudate	brain

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