Variant report

Variant	rs7354983
Chromosome Location	chr1:66988149-66988150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10889624	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10889625	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11208903	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12143964	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1338184	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1338194	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1338200	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1415974	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1415984	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1547737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1856315	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1947083	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2121051	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2859914	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4142763	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4655494	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6588203	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6588204	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6691033	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7354930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355221	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7540195	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7543607	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs967322	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs967325	0.95[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs984409	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs994396	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518465	chr1:66986377-66988586	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:66986200-66989400	Weak transcription	HepG2	liver
2	chr1:66987000-66988200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr1:66987000-66988200	Enhancers	NHLF	lung
4	chr1:66987000-66988400	Enhancers	Osteobl	bone
5	chr1:66987000-66990400	Enhancers	Hela-S3	cervix
6	chr1:66987200-66988200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:66987200-66988200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr1:66987200-66988200	Enhancers	HMEC	breast
9	chr1:66987200-66988200	Enhancers	NHDF-Ad	bronchial
10	chr1:66987200-66988200	Enhancers	NHEK	skin
11	chr1:66987200-66990200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:66987600-66988400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:66987800-66989200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:66987800-66989200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:66987800-66989200	Weak transcription	NH-A	brain
16	chr1:66987800-66992600	Weak transcription	HUVEC	blood vessel
17	chr1:66988000-66989000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:66988000-66990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:66988000-66993400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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