Variant report

Variant	rs7355098
Chromosome Location	chr1:211691501-211691502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211682048..211685729-chr1:211686598..211691532,5	K562	blood:
2	chr1:210545206..210547254-chr1:211690424..211692369,2	MCF-7	breast:
3	chr1:211688371..211691980-chr1:211692436..211695699,4	K562	blood:
4	chr1:211690573..211693033-chr1:211694499..211696048,2	MCF-7	breast:
5	chr1:211687723..211692261-chr1:211692405..211697712,7	MCF-7	breast:
6	chr1:211684185..211686089-chr1:211689090..211692200,3	K562	blood:
7	chr1:211686791..211692090-chr1:211692436..211697358,7	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10159027	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057566	1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1533220	0.82[MEX][hapmap]
rs17017668	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs56032913	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56197256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59256122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072846	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072847	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072853	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354876	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355215	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138748	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138754	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138755	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138756	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74138763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7529964	0.89[EUR][1000 genomes]
rs784380	0.82[MEX][hapmap]
rs9308420	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1826724	chr1:211684336-211694508	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211688200-211701200	Weak transcription	Gastric	stomach
2	chr1:211689400-211691600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:211689400-211691800	Enhancers	GM12878-XiMat	blood
4	chr1:211689400-211692000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr1:211689400-211692000	Enhancers	Fetal Intestine Small	intestine
6	chr1:211689400-211692200	Enhancers	Fetal Intestine Large	intestine
7	chr1:211689400-211694400	Weak transcription	Right Atrium	heart
8	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr1:211689600-211691800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:211689600-211692800	Weak transcription	Fetal Muscle Leg	muscle
12	chr1:211690200-211693400	Enhancers	Primary B cells from cord blood	blood
13	chr1:211690200-211693400	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:211690200-211698400	Enhancers	Liver	Liver
15	chr1:211690400-211695800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:211690600-211691800	Enhancers	HepG2	liver
17	chr1:211690800-211691600	Weak transcription	Spleen	Spleen
18	chr1:211690800-211694000	Weak transcription	Placenta	Placenta
19	chr1:211690800-211694400	Weak transcription	K562	blood
20	chr1:211690800-211694600	Weak transcription	A549	lung
21	chr1:211691000-211700400	Weak transcription	Fetal Thymus	thymus
22	chr1:211691200-211692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr1:211691200-211694400	Weak transcription	Hela-S3	cervix
24	chr1:211691400-211693000	Enhancers	Primary monocytes fromperipheralblood	blood

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