Variant report

Variant	rs7355215
Chromosome Location	chr1:211689767-211689768
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211687551..211691125-chr1:211748742..211753518,8	MCF-7	breast:
2	chr1:211682048..211685729-chr1:211686598..211691532,5	K562	blood:
3	chr1:211688371..211691980-chr1:211692436..211695699,4	K562	blood:
4	chr1:211687762..211689998-chr1:211828619..211830675,2	K562	blood:
5	chr1:211670282..211671947-chr1:211688401..211690646,2	K562	blood:
6	chr1:211687643..211690440-chr1:211826057..211828065,2	MCF-7	breast:
7	chr1:211687930..211690976-chr1:211698757..211702069,3	K562	blood:
8	chr1:211687723..211692261-chr1:211692405..211697712,7	MCF-7	breast:
9	chr1:211684185..211686089-chr1:211689090..211692200,3	K562	blood:
10	chr1:211686791..211692090-chr1:211692436..211697358,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000222080	Chromatin interaction
ENSG00000170385	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10159027	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12057566	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56032913	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56105820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56197256	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59256122	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072846	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072847	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072853	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354818	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7354876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355103	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355184	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7355185	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138748	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138757	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74138758	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74138763	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7529964	0.89[EUR][1000 genomes]
rs9308420	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832514	chr1:211630247-211794963	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv1826724	chr1:211684336-211694508	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211686000-211690800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211686600-211691000	Enhancers	Stomach Mucosa	stomach
3	chr1:211687600-211690200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr1:211687600-211690800	Enhancers	Spleen	Spleen
5	chr1:211688200-211701200	Weak transcription	Gastric	stomach
6	chr1:211688600-211690200	Flanking Active TSS	Liver	Liver
7	chr1:211688800-211690200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr1:211688800-211690600	Active TSS	Rectal Smooth Muscle	rectum
9	chr1:211689000-211690400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:211689000-211690600	Flanking Active TSS	HepG2	liver
11	chr1:211689200-211690200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:211689200-211690200	Weak transcription	Thymus	Thymus
13	chr1:211689400-211689800	Enhancers	Primary B cells from cord blood	blood
14	chr1:211689400-211689800	Enhancers	Primary B cells from peripheral blood	blood
15	chr1:211689400-211689800	Enhancers	Primary hematopoietic stem cells	blood
16	chr1:211689400-211690000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:211689400-211690000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:211689400-211690000	Weak transcription	Esophagus	oesophagus
19	chr1:211689400-211690000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr1:211689400-211690000	Enhancers	Hela-S3	cervix
21	chr1:211689400-211690200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr1:211689400-211690200	Enhancers	Colonic Mucosa	Colon
23	chr1:211689400-211690200	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr1:211689400-211690400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:211689400-211690400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr1:211689400-211690400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:211689400-211690400	Weak transcription	Brain Angular Gyrus	brain
28	chr1:211689400-211690400	Weak transcription	Fetal Thymus	thymus
29	chr1:211689400-211690400	Weak transcription	Lung	lung
30	chr1:211689400-211690400	Weak transcription	HMEC	breast
31	chr1:211689400-211690600	Weak transcription	Primary T cells from cord blood	blood
32	chr1:211689400-211690600	Enhancers	Duodenum Mucosa	Duodenum
33	chr1:211689400-211690800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr1:211689400-211690800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:211689400-211690800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:211689400-211690800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:211689400-211690800	Enhancers	Placenta	Placenta
38	chr1:211689400-211690800	Enhancers	A549	lung
39	chr1:211689400-211690800	Enhancers	K562	blood
40	chr1:211689400-211691600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:211689400-211691800	Enhancers	GM12878-XiMat	blood
42	chr1:211689400-211692000	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr1:211689400-211692000	Enhancers	Fetal Intestine Small	intestine
44	chr1:211689400-211692200	Enhancers	Fetal Intestine Large	intestine
45	chr1:211689400-211694400	Weak transcription	Right Atrium	heart
46	chr1:211689400-211701200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr1:211689400-211715000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr1:211689600-211690000	Weak transcription	Fetal Kidney	kidney
49	chr1:211689600-211690000	Weak transcription	NHEK	skin
50	chr1:211689600-211690400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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