Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:132935279..132937061-chr6:133139072..133141964,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1081075	0.96[ASN][1000 genomes]
rs1081076	0.94[ASN][1000 genomes]
rs1081077	0.96[ASN][1000 genomes]
rs1081078	0.94[ASN][1000 genomes]
rs55687137	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56823002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58858474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58942161	0.82[ASN][1000 genomes]
rs59148659	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60076882	0.97[AFR][1000 genomes]
rs61731216	0.97[AFR][1000 genomes]
rs73555844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73555846	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73555851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555868	0.88[AFR][1000 genomes]
rs73775132	0.96[ASN][1000 genomes]
rs73775145	0.92[AFR][1000 genomes]
rs73775147	0.97[AFR][1000 genomes]
rs8192647	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132931600-132937000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:132932000-132937200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:132935200-132937600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:132935600-132937000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:132936600-132937000	Active TSS	Brain Cingulate Gyrus	brain
6	chr6:132936800-132937200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:132936800-132938000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search: