Variant report

Variant	rs73555868
Chromosome Location	chr6:132940805-132940806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs55687137	0.88[AFR][1000 genomes]
rs59148659	0.81[AFR][1000 genomes]
rs60076882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61731216	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73555844	0.88[AFR][1000 genomes]
rs73555846	0.88[AFR][1000 genomes]
rs73555851	0.88[AFR][1000 genomes]
rs73555853	0.88[AFR][1000 genomes]
rs73555855	0.88[AFR][1000 genomes]
rs73555862	0.88[AFR][1000 genomes]
rs73775145	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775147	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132940800-132941000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links