Variant report

Variant	rs73561060
Chromosome Location	chr13:87772755-87772756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:87745697..87747842-chr13:87770397..87772892,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs55758789	0.83[AMR][1000 genomes]
rs55811630	0.83[AMR][1000 genomes]
rs56036938	0.83[AMR][1000 genomes]
rs56702454	0.83[AMR][1000 genomes]
rs56814755	0.83[AMR][1000 genomes]
rs56858752	0.83[AMR][1000 genomes]
rs56970807	0.83[AMR][1000 genomes]
rs57019306	0.83[AMR][1000 genomes]
rs57289088	0.83[AMR][1000 genomes]
rs57871348	0.83[AMR][1000 genomes]
rs58436419	0.83[AMR][1000 genomes]
rs58514415	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58833676	0.83[AMR][1000 genomes]
rs59102208	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59699555	0.83[AMR][1000 genomes]
rs60065293	0.83[AMR][1000 genomes]
rs60475582	0.83[AMR][1000 genomes]
rs60632788	0.83[AMR][1000 genomes]
rs60967936	0.83[AMR][1000 genomes]
rs61001114	0.83[AMR][1000 genomes]
rs61607055	0.83[AMR][1000 genomes]
rs61613775	0.83[AMR][1000 genomes]
rs61711434	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73558873	0.83[AMR][1000 genomes]
rs73558881	0.83[AMR][1000 genomes]
rs73558888	0.83[AMR][1000 genomes]
rs73558889	0.83[AMR][1000 genomes]
rs73558892	0.83[AMR][1000 genomes]
rs73558894	0.83[AMR][1000 genomes]
rs73558897	0.83[AMR][1000 genomes]
rs73560614	0.83[AMR][1000 genomes]
rs73560615	0.83[AMR][1000 genomes]
rs73560618	0.83[AMR][1000 genomes]
rs73560626	0.83[AMR][1000 genomes]
rs73560628	0.83[AMR][1000 genomes]
rs73560690	0.83[AMR][1000 genomes]
rs73560692	0.83[AMR][1000 genomes]
rs73560695	0.83[AMR][1000 genomes]
rs73561058	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561062	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561063	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561064	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561067	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561074	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561076	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561079	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561089	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73561097	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73563113	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73565477	0.83[AMR][1000 genomes]
rs73565483	0.83[AMR][1000 genomes]
rs73566070	0.83[AMR][1000 genomes]
rs73566074	0.83[AMR][1000 genomes]
rs73566083	0.83[AMR][1000 genomes]
rs73566091	0.83[AMR][1000 genomes]
rs73566098	0.83[AMR][1000 genomes]
rs73566100	0.83[AMR][1000 genomes]
rs73567606	0.83[AMR][1000 genomes]
rs74103265	0.83[AMR][1000 genomes]
rs74103273	0.83[AMR][1000 genomes]
rs74103280	0.83[AMR][1000 genomes]
rs74103287	0.83[AMR][1000 genomes]
rs74103289	0.83[AMR][1000 genomes]
rs74103291	0.83[AMR][1000 genomes]
rs74103350	0.98[AFR][1000 genomes]
rs74103357	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74103367	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs74103376	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3351332	chr13:87771951-87775549	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87770400-87781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87771400-87773200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:87772000-87774200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr13:87772200-87776800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr13:87772400-87774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr13:87772600-87773000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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