Variant report

Variant	rs73561093
Chromosome Location	chr13:87781280-87781281
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12100177	0.94[AFR][1000 genomes]
rs4270028	0.86[AFR][1000 genomes]
rs4334135	0.82[AFR][1000 genomes]
rs4409956	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4418932	0.83[AFR][1000 genomes]
rs4421855	0.83[AFR][1000 genomes]
rs4540943	0.83[AFR][1000 genomes]
rs61663315	0.94[AFR][1000 genomes]
rs73561091	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9516493	0.89[AFR][1000 genomes]
rs9516498	0.95[AFR][1000 genomes]
rs9516501	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9516511	0.96[AFR][1000 genomes]
rs9516514	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9516517	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524664	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524675	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524680	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524683	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524686	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524688	0.84[AFR][1000 genomes]
rs9524694	0.83[AFR][1000 genomes]
rs9524701	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524737	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524749	0.82[AFR][1000 genomes]
rs9524755	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524758	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524759	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs9524787	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87777000-87782000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:87777200-87781600	Weak transcription	Hela-S3	cervix
3	chr13:87777200-87781800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:87777200-87782000	Weak transcription	NH-A	brain
5	chr13:87777200-87782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:87777200-87784000	Weak transcription	HSMMtube	muscle
7	chr13:87777400-87782000	Weak transcription	HMEC	breast
8	chr13:87780200-87782200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:87780200-87784600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:87780400-87782400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:87780800-87782400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:87780800-87783000	Enhancers	Brain Germinal Matrix	brain
13	chr13:87781000-87782200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:87781200-87781600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:87781200-87781600	Weak transcription	Fetal Heart	heart
16	chr13:87781200-87782000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:87781200-87782200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr13:87781200-87782200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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