Variant report

Variant	rs7356173
Chromosome Location	chr4:107223219-107223220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:107223107-107223546	HepG2	liver:	n/a	n/a
2	FOXA1	chr4:107223184-107223651	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:107218105..107220091-chr4:107221627..107224316,2	K562	blood:
2	chr4:107222542..107224748-chr4:107236218..107238932,2	MCF-7	breast:
3	chr4:107218591..107221173-chr4:107222816..107224928,3	K562	blood:

Variant related genes	Relation type
TBCK	TF binding region
ENSG00000145348	Chromatin interaction
ENSG00000164022	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10009873	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10010622	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10010712	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10026011	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10033060	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11544776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11729801	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11736679	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28408532	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28432701	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28597815	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28600674	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28615207	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28648796	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28668834	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28722963	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28783132	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28786397	0.90[AMR][1000 genomes]
rs28786712	0.90[AMR][1000 genomes]
rs28823294	0.90[AMR][1000 genomes]
rs28843476	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28848568	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28852980	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28857517	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28890246	0.90[AMR][1000 genomes]
rs6820647	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7679603	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7682001	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9996386	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv1819960	chr4:107216320-107246136	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107114600-107236000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:107155600-107236000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:107178000-107236200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:107178000-107236200	Weak transcription	Right Ventricle	heart
5	chr4:107178000-107236600	Weak transcription	Esophagus	oesophagus
6	chr4:107178000-107236600	Weak transcription	Pancreas	Pancrea
7	chr4:107178200-107236000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr4:107194800-107227600	Weak transcription	Brain Angular Gyrus	brain
9	chr4:107198800-107235600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:107201400-107227800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:107202800-107236000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:107204000-107235800	Weak transcription	Psoas Muscle	Psoas
13	chr4:107204000-107236200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:107205600-107236000	Weak transcription	Brain Anterior Caudate	brain
15	chr4:107205800-107227600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr4:107207000-107227600	Weak transcription	Brain Substantia Nigra	brain
17	chr4:107208000-107229600	Weak transcription	Aorta	Aorta
18	chr4:107208800-107226000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr4:107209000-107223400	Weak transcription	NHLF	lung
20	chr4:107209000-107226800	Weak transcription	NHEK	skin
21	chr4:107209000-107229400	Weak transcription	GM12878-XiMat	blood
22	chr4:107209000-107231200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:107209200-107224600	Weak transcription	K562	blood
24	chr4:107209200-107236000	Weak transcription	HMEC	breast
25	chr4:107211000-107226200	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr4:107211800-107223800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:107211800-107225200	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:107212200-107234400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr4:107212400-107227800	Weak transcription	Fetal Brain Female	brain
30	chr4:107213200-107235600	Weak transcription	Fetal Kidney	kidney
31	chr4:107213200-107236200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:107213400-107236000	Weak transcription	Colon Smooth Muscle	Colon
33	chr4:107213400-107236200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr4:107214200-107227800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:107215600-107236000	Weak transcription	Brain Germinal Matrix	brain
36	chr4:107215600-107236200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:107215800-107224800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:107215800-107229600	Weak transcription	Dnd41	blood
39	chr4:107215800-107236600	Weak transcription	Small Intestine	intestine
40	chr4:107215800-107236800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:107216000-107235600	Weak transcription	Fetal Intestine Small	intestine
42	chr4:107216200-107229200	Weak transcription	Fetal Lung	lung
43	chr4:107216200-107236200	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr4:107216200-107236200	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:107216200-107236200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr4:107216400-107226800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr4:107216400-107228200	Weak transcription	Adipose Nuclei	Adipose
48	chr4:107216400-107229400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr4:107216400-107229600	Weak transcription	Gastric	stomach
50	chr4:107216400-107233800	Weak transcription	NH-A	brain

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