Variant report
| Variant | rs73563757 |
|---|---|
| Chromosome Location | chr13:87992720-87992721 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SLITRK5-14 | chr13:87992526-87992762 | NONHSAT034584 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs56091947 | 1.00[AMR][1000 genomes] |
| rs57253656 | 1.00[AMR][1000 genomes] |
| rs60609846 | 1.00[AMR][1000 genomes] |
| rs60812537 | 1.00[AMR][1000 genomes] |
| rs61570176 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73561222 | 1.00[AMR][1000 genomes] |
| rs73561224 | 1.00[AMR][1000 genomes] |
| rs73561226 | 1.00[AMR][1000 genomes] |
| rs73561227 | 1.00[AMR][1000 genomes] |
| rs73561234 | 1.00[AMR][1000 genomes] |
| rs73562481 | 1.00[AMR][1000 genomes] |
| rs73562486 | 1.00[AMR][1000 genomes] |
| rs73563755 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73563759 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73563761 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73563766 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73563774 | 1.00[AMR][1000 genomes] |
| rs73563779 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73563791 | 0.85[AFR][1000 genomes] |
| rs74105658 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045687 | chr13:87822969-88114685 | Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv541860 | chr13:87822969-88114685 | Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv930999 | chr13:87831662-88143592 | Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 4 | nsv1043448 | chr13:87835419-88140970 | Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 5 | nsv916254 | chr13:87856806-88107725 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv1044185 | chr13:87949735-88096644 | Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | esv3366115 | chr13:87992451-87994449 | Enhancers Weak transcription | lncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:87982200-87998600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
