Variant report

Variant	rs73564796
Chromosome Location	chr11:93710264-93710265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93710125..93711813-chr11:93711990..93713968,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10501813	0.98[ASN][1000 genomes]
rs11825709	0.96[ASN][1000 genomes]
rs1401184	0.98[ASN][1000 genomes]
rs1518560	0.94[ASN][1000 genomes]
rs1589166	0.98[ASN][1000 genomes]
rs1607401	0.98[ASN][1000 genomes]
rs1850656	0.93[ASN][1000 genomes]
rs1894165	0.98[ASN][1000 genomes]
rs1894166	0.94[ASN][1000 genomes]
rs1945786	0.94[ASN][1000 genomes]
rs1945787	0.94[ASN][1000 genomes]
rs2020351	0.94[ASN][1000 genomes]
rs2102857	0.98[ASN][1000 genomes]
rs2139089	0.94[ASN][1000 genomes]
rs2176563	0.98[ASN][1000 genomes]
rs2203793	0.98[ASN][1000 genomes]
rs2213108	0.93[ASN][1000 genomes]
rs2213110	0.95[ASN][1000 genomes]
rs2399750	0.94[ASN][1000 genomes]
rs2460049	0.87[ASN][1000 genomes]
rs2460050	0.94[ASN][1000 genomes]
rs2460052	0.92[ASN][1000 genomes]
rs2460053	0.98[ASN][1000 genomes]
rs2460064	0.94[ASN][1000 genomes]
rs2460065	0.98[ASN][1000 genomes]
rs2460069	0.94[ASN][1000 genomes]
rs2460070	0.98[ASN][1000 genomes]
rs2462733	0.98[ASN][1000 genomes]
rs2462735	0.98[ASN][1000 genomes]
rs2462756	0.97[ASN][1000 genomes]
rs2462757	0.92[ASN][1000 genomes]
rs2462758	0.98[ASN][1000 genomes]
rs2462759	0.94[ASN][1000 genomes]
rs2462760	0.96[ASN][1000 genomes]
rs2462763	0.94[ASN][1000 genomes]
rs2511380	0.94[ASN][1000 genomes]
rs2511381	0.88[ASN][1000 genomes]
rs2511403	0.92[ASN][1000 genomes]
rs2511411	0.98[ASN][1000 genomes]
rs56938392	1.00[ASN][1000 genomes]
rs57106172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57586533	0.96[ASN][1000 genomes]
rs57953549	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59689949	0.96[ASN][1000 genomes]
rs59793398	1.00[ASN][1000 genomes]
rs66480929	0.83[ASN][1000 genomes]
rs66514329	0.98[ASN][1000 genomes]
rs66523751	0.86[ASN][1000 genomes]
rs66538341	0.92[ASN][1000 genomes]
rs66918645	0.83[ASN][1000 genomes]
rs66977226	0.96[ASN][1000 genomes]
rs67001808	1.00[ASN][1000 genomes]
rs67243356	0.92[ASN][1000 genomes]
rs67412659	1.00[ASN][1000 genomes]
rs67988338	0.96[ASN][1000 genomes]
rs72964631	1.00[ASN][1000 genomes]
rs72964645	1.00[ASN][1000 genomes]
rs72964666	0.98[ASN][1000 genomes]
rs73551180	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73564799	1.00[ASN][1000 genomes]
rs959342	0.94[ASN][1000 genomes]
rs959343	0.94[ASN][1000 genomes]
rs978777	0.97[ASN][1000 genomes]
rs9787791	0.83[ASN][1000 genomes]
rs989088	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2757466	chr11:93676224-93714950	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759854	chr11:93676224-93714950	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93709800-93710800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93709800-93711000	Enhancers	NHEK	skin
3	chr11:93710000-93710800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:93710000-93710800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:93710000-93710800	Enhancers	HMEC	breast

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