Variant report

Variant	rs73566842
Chromosome Location	chr11:93734366-93734367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1945782	1.00[EUR][1000 genomes]
rs2251782	1.00[EUR][1000 genomes]
rs2460068	1.00[EUR][1000 genomes]
rs2511408	1.00[EUR][1000 genomes]
rs58116509	1.00[EUR][1000 genomes]
rs59276869	1.00[EUR][1000 genomes]
rs60611834	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61285551	1.00[EUR][1000 genomes]
rs7113934	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73551201	1.00[EUR][1000 genomes]
rs73552919	1.00[EUR][1000 genomes]
rs73561150	1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	1.00[EUR][1000 genomes]
rs73564781	1.00[EUR][1000 genomes]
rs73564788	1.00[EUR][1000 genomes]
rs73566804	1.00[EUR][1000 genomes]
rs73566811	1.00[EUR][1000 genomes]
rs73566818	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566826	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566837	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566869	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568841	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568844	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568854	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568863	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7928328	1.00[EUR][1000 genomes]
rs7940306	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]
rs7944971	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv555965	chr11:93713911-93747735	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93731200-93735200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:93734000-93734400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:93734000-93734400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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