Variant report

Variant	rs73567589
Chromosome Location	chr8:48510798-48510799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:48507124..48508721-chr8:48509922..48512866,2	MCF-7	breast:

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs16925237	1.00[AMR][1000 genomes]
rs16926041	1.00[AMR][1000 genomes]
rs16926621	1.00[AMR][1000 genomes]
rs16927308	1.00[AMR][1000 genomes]
rs16927336	1.00[AMR][1000 genomes]
rs2362918	1.00[AMR][1000 genomes]
rs56807775	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57210767	1.00[AMR][1000 genomes]
rs57274985	1.00[AMR][1000 genomes]
rs57659543	1.00[AMR][1000 genomes]
rs58572522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58592579	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58965290	1.00[AMR][1000 genomes]
rs59053481	1.00[AMR][1000 genomes]
rs59337594	1.00[AMR][1000 genomes]
rs59402950	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59422998	1.00[AMR][1000 genomes]
rs60256648	1.00[AMR][1000 genomes]
rs60573041	0.81[AFR][1000 genomes]
rs61376238	1.00[AMR][1000 genomes]
rs61519381	1.00[AMR][1000 genomes]
rs73565212	1.00[AMR][1000 genomes]
rs73565216	1.00[AMR][1000 genomes]
rs73565219	1.00[AMR][1000 genomes]
rs73565220	1.00[AMR][1000 genomes]
rs73565225	1.00[AMR][1000 genomes]
rs73565226	1.00[AMR][1000 genomes]
rs73565228	1.00[AMR][1000 genomes]
rs73565235	1.00[AMR][1000 genomes]
rs73565236	1.00[AMR][1000 genomes]
rs73565244	1.00[AMR][1000 genomes]
rs73565247	1.00[AMR][1000 genomes]
rs73565249	1.00[AMR][1000 genomes]
rs73565251	1.00[AMR][1000 genomes]
rs73565260	1.00[AMR][1000 genomes]
rs73565265	1.00[AMR][1000 genomes]
rs73565271	1.00[AMR][1000 genomes]
rs73565273	1.00[AMR][1000 genomes]
rs73565275	1.00[AMR][1000 genomes]
rs73565280	1.00[AMR][1000 genomes]
rs73565287	1.00[AMR][1000 genomes]
rs73565297	1.00[AMR][1000 genomes]
rs73565299	1.00[AMR][1000 genomes]
rs73567507	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567511	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567576	1.00[AMR][1000 genomes]
rs73567579	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567581	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567582	1.00[AMR][1000 genomes]
rs73567584	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567590	1.00[AMR][1000 genomes]
rs73567593	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567594	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73567597	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569205	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569208	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569212	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569216	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569220	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73569224	1.00[AMR][1000 genomes]
rs73569227	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571448	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571453	1.00[AMR][1000 genomes]
rs73571454	1.00[AMR][1000 genomes]
rs73571459	1.00[AMR][1000 genomes]
rs73571460	1.00[AMR][1000 genomes]
rs73571462	1.00[AMR][1000 genomes]
rs73571465	1.00[AMR][1000 genomes]
rs73571467	1.00[AMR][1000 genomes]
rs73571469	1.00[AMR][1000 genomes]
rs73582867	1.00[AMR][1000 genomes]
rs7463108	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs751786	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7818094	1.00[AMR][1000 genomes]
rs8178271	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693377	chr8:47824261-48582964	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv491863	chr8:48053825-48586176	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1025674	chr8:48306843-48548862	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv890848	chr8:48405007-48535622	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv470211	chr8:48405007-48545961	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1027043	chr8:48444306-48637900	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv539596	chr8:48444306-48637900	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1029297	chr8:48468835-48530803	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1030163	chr8:48468835-48544495	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1803608	chr8:48506628-48874811	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:48466800-48522600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:48473000-48511400	Weak transcription	Primary T cells from cord blood	blood
3	chr8:48481200-48513600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr8:48496600-48513400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:48498600-48522600	Weak transcription	Fetal Stomach	stomach
6	chr8:48500200-48511400	Weak transcription	Fetal Intestine Small	intestine
7	chr8:48502000-48510800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:48503600-48535000	Weak transcription	Dnd41	blood
9	chr8:48503800-48515600	Weak transcription	Fetal Intestine Large	intestine
10	chr8:48504400-48511200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:48504800-48511400	Weak transcription	Aorta	Aorta
12	chr8:48505000-48514800	Weak transcription	Thymus	Thymus
13	chr8:48505200-48511400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:48505200-48512800	Weak transcription	Osteobl	bone
15	chr8:48506400-48513400	Weak transcription	A549	lung
16	chr8:48506400-48522600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr8:48506600-48510800	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr8:48506600-48510800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr8:48506600-48511400	Weak transcription	Spleen	Spleen
20	chr8:48506600-48511600	Weak transcription	Lung	lung
21	chr8:48506600-48512600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr8:48506600-48513200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:48506600-48513600	Weak transcription	Colonic Mucosa	Colon
24	chr8:48506600-48513800	Weak transcription	Placenta	Placenta
25	chr8:48506600-48514000	Weak transcription	Small Intestine	intestine
26	chr8:48506600-48516800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr8:48506600-48516800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:48506600-48517000	Weak transcription	Gastric	stomach
29	chr8:48506600-48525400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr8:48506600-48530600	Weak transcription	HepG2	liver
31	chr8:48507200-48511600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:48507200-48513400	Weak transcription	NHLF	lung
33	chr8:48507200-48514200	Weak transcription	Pancreas	Pancrea
34	chr8:48507200-48522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:48507400-48513600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:48507600-48514400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr8:48507800-48512800	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr8:48507800-48522400	Weak transcription	HSMM	muscle
39	chr8:48508400-48511400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:48508400-48517800	Weak transcription	HSMMtube	muscle
41	chr8:48508400-48518400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:48509400-48514200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr8:48509600-48511200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr8:48509600-48511600	Weak transcription	Primary B cells from cord blood	blood
45	chr8:48509600-48512400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr8:48509800-48512200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr8:48509800-48513000	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr8:48509800-48513000	Weak transcription	NHEK	skin
49	chr8:48509800-48518600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr8:48510000-48512400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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