Variant report
| Variant | rs73568841 |
|---|---|
| Chromosome Location | chr11:93747917-93747918 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1945782 | 1.00[EUR][1000 genomes] |
| rs2251782 | 1.00[EUR][1000 genomes] |
| rs2460068 | 1.00[EUR][1000 genomes] |
| rs2511408 | 1.00[EUR][1000 genomes] |
| rs58116509 | 1.00[EUR][1000 genomes] |
| rs59276869 | 1.00[EUR][1000 genomes] |
| rs60611834 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61285551 | 1.00[EUR][1000 genomes] |
| rs7113934 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73551201 | 1.00[EUR][1000 genomes] |
| rs73552919 | 1.00[EUR][1000 genomes] |
| rs73561150 | 1.00[EUR][1000 genomes] |
| rs73561172 | 1.00[EUR][1000 genomes] |
| rs73563050 | 1.00[EUR][1000 genomes] |
| rs73564781 | 1.00[EUR][1000 genomes] |
| rs73564788 | 1.00[EUR][1000 genomes] |
| rs73566804 | 1.00[EUR][1000 genomes] |
| rs73566811 | 1.00[EUR][1000 genomes] |
| rs73566818 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73566826 | 0.92[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73566837 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73566842 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73566869 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73568844 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73568854 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73568863 | 0.96[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7928328 | 1.00[EUR][1000 genomes] |
| rs7940306 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7944971 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1049467 | chr11:93651025-93778717 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv898183 | chr11:93725384-93906735 | Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv898184 | chr11:93741612-93969726 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:93746000-93749600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
| 2 | chr11:93747800-93750400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
