Variant report

Variant	rs73571643
Chromosome Location	chr8:49035329-49035330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17287584	1.00[AMR][1000 genomes]
rs45531731	1.00[AMR][1000 genomes]
rs73573712	1.00[AMR][1000 genomes]
rs73577390	1.00[AMR][1000 genomes]
rs73579436	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579441	0.82[AFR][1000 genomes]
rs73579442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8178070	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931032	chr8:48744329-49091359	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1033298	chr8:48965133-49048832	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49021400-49035800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49033000-49035800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:49033200-49037000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:49033800-49035800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:49034200-49035400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:49034400-49035600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:49034400-49035600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:49034400-49035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:49034400-49035800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr8:49034600-49037600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr8:49035000-49036000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr8:49035200-49036000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:49035200-49037200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr8:49035200-49037400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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