Variant report

Variant	rs73578390
Chromosome Location	chr11:120525991-120525992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7114168	1.00[AMR][1000 genomes]
rs73576398	1.00[AMR][1000 genomes]
rs73578304	1.00[AMR][1000 genomes]
rs73578310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7926067	1.00[AMR][1000 genomes]
rs949297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468881	chr11:120446830-120551100	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv556476	chr11:120446830-120551100	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120512800-120537800	Weak transcription	Ovary	ovary
2	chr11:120514400-120543600	Weak transcription	Brain Substantia Nigra	brain
3	chr11:120516600-120532600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:120516800-120530200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:120516800-120534200	Weak transcription	Right Atrium	heart
6	chr11:120520000-120543800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr11:120520200-120529800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:120522600-120533200	Weak transcription	Fetal Lung	lung
9	chr11:120523600-120532200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:120525800-120528000	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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