Variant report
| Variant | rs73580295 |
|---|---|
| Chromosome Location | chr16:80609241-80609242 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs16953630 | 1.00[EUR][1000 genomes] |
| rs4258630 | 1.00[EUR][1000 genomes] |
| rs4291914 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7186842 | 1.00[EUR][1000 genomes] |
| rs7187446 | 1.00[EUR][1000 genomes] |
| rs7188110 | 1.00[EUR][1000 genomes] |
| rs7189758 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7191601 | 1.00[EUR][1000 genomes] |
| rs7206475 | 1.00[EUR][1000 genomes] |
| rs726811 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73580250 | 1.00[EUR][1000 genomes] |
| rs73580255 | 1.00[EUR][1000 genomes] |
| rs73580262 | 1.00[EUR][1000 genomes] |
| rs73580273 | 1.00[EUR][1000 genomes] |
| rs73580290 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73580293 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73580299 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73588482 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73588498 | 1.00[EUR][1000 genomes] |
| rs73588500 | 1.00[EUR][1000 genomes] |
| rs74029692 | 1.00[EUR][1000 genomes] |
| rs8049769 | 1.00[EUR][1000 genomes] |
| rs8052782 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv907001 | chr16:80405292-80620611 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 4 | esv3356733 | chr16:80608151-80612849 | Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80605400-80611200 | Weak transcription | Gastric | stomach |
