Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80598399..80600334-chr16:80611108..80613463,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16953630	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4258630	1.00[EUR][1000 genomes]
rs4291914	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186842	1.00[EUR][1000 genomes]
rs7187446	1.00[EUR][1000 genomes]
rs7188110	1.00[EUR][1000 genomes]
rs7189758	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191601	1.00[EUR][1000 genomes]
rs7206475	1.00[EUR][1000 genomes]
rs726811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580250	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580255	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580262	1.00[EUR][1000 genomes]
rs73580273	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580290	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580293	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73580295	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588482	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588498	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73588500	1.00[EUR][1000 genomes]
rs74029692	1.00[EUR][1000 genomes]
rs8049769	1.00[EUR][1000 genomes]
rs8052782	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3356733	chr16:80608151-80612849	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80611200-80612000	Enhancers	Gastric	stomach
2	chr16:80611200-80612400	Enhancers	Liver	Liver
3	chr16:80611200-80612400	Enhancers	Duodenum Mucosa	Duodenum
4	chr16:80611200-80612400	Enhancers	Fetal Intestine Small	intestine
5	chr16:80611200-80612400	Enhancers	Pancreas	Pancrea
6	chr16:80611400-80612000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr16:80611400-80612000	Enhancers	Fetal Intestine Large	intestine
8	chr16:80611400-80612000	Enhancers	Stomach Mucosa	stomach
9	chr16:80611600-80612000	Enhancers	HepG2	liver
10	chr16:80611600-80612200	Enhancers	Small Intestine	intestine
11	chr16:80611600-80614000	Enhancers	Primary T helper cells PMA-I stimulated	--

Quick Search: