Variant report

Variant	rs73581486
Chromosome Location	chr16:80381833-80381834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12934434	1.00[AMR][1000 genomes]
rs16953014	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953078	1.00[AMR][1000 genomes]
rs2086809	1.00[AMR][1000 genomes]
rs56005098	1.00[AMR][1000 genomes]
rs56130301	1.00[AMR][1000 genomes]
rs57630839	1.00[AMR][1000 genomes]
rs57740447	1.00[AMR][1000 genomes]
rs60777660	1.00[AMR][1000 genomes]
rs60957378	1.00[AMR][1000 genomes]
rs73579646	1.00[AMR][1000 genomes]
rs73579647	1.00[AMR][1000 genomes]
rs73579651	1.00[AMR][1000 genomes]
rs73579655	1.00[AMR][1000 genomes]
rs73581439	1.00[AMR][1000 genomes]
rs73581483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028280	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74028409	1.00[AMR][1000 genomes]
rs74028410	1.00[AMR][1000 genomes]
rs74028463	1.00[AMR][1000 genomes]
rs74029608	1.00[AMR][1000 genomes]
rs74029609	1.00[AMR][1000 genomes]
rs74030061	1.00[AMR][1000 genomes]
rs8047720	1.00[AMR][1000 genomes]
rs8049405	1.00[AMR][1000 genomes]
rs9928544	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv949197	chr16:80284557-80456403	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1064628	chr16:80286004-80406177	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv542986	chr16:80286004-80406177	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762333	chr16:80307755-80509983	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1056026	chr16:80317627-80471469	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv542987	chr16:80317627-80471469	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv906999	chr16:80335933-80387019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833299	chr16:80341745-80549683	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv521087	chr16:80379730-80381924	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80379600-80382000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:80380800-80382000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr16:80380800-80382000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr16:80380800-80383600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr16:80381400-80382200	Enhancers	Brain Germinal Matrix	brain
6	chr16:80381400-80382400	Enhancers	Brain Hippocampus Middle	brain
7	chr16:80381400-80383600	Enhancers	Fetal Stomach	stomach
8	chr16:80381600-80382200	Enhancers	Ovary	ovary
9	chr16:80381600-80382400	Enhancers	Fetal Muscle Leg	muscle
10	chr16:80381800-80382000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr16:80381800-80382000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
12	chr16:80381800-80382000	Enhancers	Duodenum Mucosa	Duodenum
13	chr16:80381800-80382200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr16:80381800-80382200	Enhancers	Adipose Nuclei	Adipose
15	chr16:80381800-80382200	Active TSS	Rectal Smooth Muscle	rectum
16	chr16:80381800-80382200	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr16:80381800-80382200	Enhancers	Spleen	Spleen
18	chr16:80381800-80382400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr16:80381800-80382400	Enhancers	Fetal Muscle Trunk	muscle
20	chr16:80381800-80382400	Enhancers	Lung	lung
21	chr16:80381800-80382600	Enhancers	Liver	Liver
22	chr16:80381800-80383200	Enhancers	Fetal Lung	lung

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