Variant report

Variant	rs73583957
Chromosome Location	chr16:80837284-80837285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80836267..80838116-chr16:81067816..81069508,2	MCF-7	breast:
2	chr16:80744840..80746889-chr16:80835828..80837978,2	MCF-7	breast:
3	chr16:80573487..80575142-chr16:80836688..80838672,2	MCF-7	breast:
4	chr16:80653224..80655610-chr16:80835327..80837663,2	MCF-7	breast:
5	chr16:80745711..80747675-chr16:80834808..80837555,2	MCF-7	breast:
6	chr16:80836730..80839628-chr16:80867393..80871297,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260896	Chromatin interaction
ENSG00000259867	Chromatin interaction
ENSG00000168589	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000166454	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11150314	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11645677	0.89[EUR][1000 genomes]
rs55888375	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs56901653	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58876685	0.99[ASN][1000 genomes]
rs73583955	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74030455	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv457560	chr16:80825206-80858143	Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
8	nsv573302	chr16:80825206-80858143	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
9	esv3376994	chr16:80836476-80839824	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
10	esv3439821	chr16:80836901-80839624	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
11	esv3420456	chr16:80837001-80839399	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80832400-80838800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr16:80836400-80837600	Enhancers	Esophagus	oesophagus
3	chr16:80836400-80838200	Active TSS	Brain Angular Gyrus	brain
4	chr16:80836600-80837400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr16:80836600-80837400	Flanking Active TSS	HUVEC	blood vessel
6	chr16:80836600-80839000	Active TSS	HSMM	muscle
7	chr16:80836800-80837400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:80836800-80838600	Active TSS	Primary hematopoietic stem cells	blood
9	chr16:80836800-80838600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr16:80836800-80838800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:80836800-80838800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:80836800-80838800	Active TSS	NH-A	brain
13	chr16:80836800-80838800	Active TSS	NHEK	skin
14	chr16:80836800-80839000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:80836800-80839000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
16	chr16:80837000-80837400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:80837000-80837400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
18	chr16:80837000-80837400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr16:80837000-80837400	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr16:80837000-80837600	Enhancers	Adipose Nuclei	Adipose
21	chr16:80837000-80838200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr16:80837000-80838200	Active TSS	Brain Substantia Nigra	brain
23	chr16:80837000-80838200	Active TSS	NHDF-Ad	bronchial
24	chr16:80837000-80838400	Active TSS	Fetal Kidney	kidney
25	chr16:80837000-80838600	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr16:80837000-80838600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr16:80837000-80838600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr16:80837000-80838600	Active TSS	Right Ventricle	heart
29	chr16:80837000-80838800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:80837000-80838800	Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr16:80837000-80838800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr16:80837000-80838800	Active TSS	Duodenum Mucosa	Duodenum
33	chr16:80837000-80839000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr16:80837000-80839000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr16:80837000-80839000	Active TSS	H9 Cell Line	embryonic stem cell
36	chr16:80837000-80839000	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr16:80837000-80839000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:80837000-80839000	Active TSS	Brain Anterior Caudate	brain
39	chr16:80837000-80839200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr16:80837000-80839200	Active TSS	Primary T helper cells PMA-I stimulated	--
41	chr16:80837000-80839200	Active TSS	Rectal Mucosa Donor 29	rectum
42	chr16:80837000-80839200	Active TSS	Rectal Smooth Muscle	rectum
43	chr16:80837000-80839200	Active TSS	Osteobl	bone
44	chr16:80837200-80837400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr16:80837200-80837400	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr16:80837200-80837400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
47	chr16:80837200-80837400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr16:80837200-80837400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
49	chr16:80837200-80837400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:80837200-80837400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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