Variant report

Variant	rs73585982
Chromosome Location	chr16:80150238-80150239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10514481	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952297	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16952319	0.95[AFR][1000 genomes]
rs16952339	0.82[AFR][1000 genomes]
rs16952360	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952361	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952363	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952367	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952390	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952423	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952439	0.84[AFR][1000 genomes]
rs16952442	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952519	0.89[AMR][1000 genomes]
rs28645719	0.89[AMR][1000 genomes]
rs60927300	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571919	0.89[AMR][1000 genomes]
rs73571920	0.89[AMR][1000 genomes]
rs73583872	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73583885	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73583898	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9941188	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80143400-80151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr16:80148200-80151400	Weak transcription	Adipose Nuclei	Adipose
5	chr16:80148200-80151400	Weak transcription	NHEK	skin
6	chr16:80148400-80151400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:80148400-80156000	Weak transcription	Ovary	ovary
8	chr16:80148600-80155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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