Variant report
Variant | rs73587358 |
---|---|
Chromosome Location | chr16:80997330-80997331 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr16:80992891..80995365-chr16:80995391..80997695,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10400999 | 0.82[ASN][1000 genomes] |
rs11643659 | 0.83[ASN][1000 genomes] |
rs11643712 | 0.83[ASN][1000 genomes] |
rs12149082 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12149171 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12149265 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12149563 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12918358 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12918594 | 0.83[ASN][1000 genomes] |
rs12919305 | 0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12919442 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs12919976 | 0.82[ASN][1000 genomes] |
rs12921215 | 0.82[ASN][1000 genomes] |
rs12924248 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12924593 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12929016 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs12932459 | 0.83[ASN][1000 genomes] |
rs12932621 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs13339451 | 0.82[ASN][1000 genomes] |
rs28833612 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs28854853 | 0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34403022 | 0.82[ASN][1000 genomes] |
rs34446590 | 0.82[ASN][1000 genomes] |
rs34468698 | 0.82[ASN][1000 genomes] |
rs34596948 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34637450 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs34887743 | 0.82[ASN][1000 genomes] |
rs34947891 | 0.82[ASN][1000 genomes] |
rs35237667 | 0.82[ASN][1000 genomes] |
rs35538366 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs35740724 | 0.82[ASN][1000 genomes] |
rs35796288 | 0.82[ASN][1000 genomes] |
rs35814745 | 0.82[ASN][1000 genomes] |
rs35942415 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs4299169 | 0.82[ASN][1000 genomes] |
rs4595816 | 0.82[ASN][1000 genomes] |
rs57498103 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs57529305 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs58542234 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs61285351 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6564806 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6564807 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs6564808 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs66488266 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs66502225 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs66720187 | 0.82[ASN][1000 genomes] |
rs67022778 | 0.82[ASN][1000 genomes] |
rs67158280 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs67390427 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs67591455 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs67921132 | 0.81[ASN][1000 genomes] |
rs68110542 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs716759 | 0.82[ASN][1000 genomes] |
rs716885 | 0.82[ASN][1000 genomes] |
rs7184287 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs7185393 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7185564 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7186782 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs7186947 | 0.85[ASN][1000 genomes] |
rs718957 | 0.81[ASN][1000 genomes] |
rs7203109 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs7206440 | 0.81[AFR][1000 genomes];0.83[ASN][1000 genomes] |
rs72813706 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs728290 | 0.82[ASN][1000 genomes] |
rs8045229 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8047125 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8047733 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8050318 | 0.82[ASN][1000 genomes] |
rs8050556 | 0.82[ASN][1000 genomes] |
rs8052374 | 0.82[ASN][1000 genomes] |
rs8053625 | 0.82[ASN][1000 genomes] |
rs8053941 | 0.82[ASN][1000 genomes] |
rs8056170 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8056592 | 0.82[ASN][1000 genomes] |
rs8057127 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8057147 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8057881 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8057989 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8059981 | 0.82[ASN][1000 genomes] |
rs8061372 | 0.81[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8061703 | 0.81[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8062360 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8062723 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8062726 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8062958 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs8063035 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9673134 | 0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9673172 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9673267 | 0.82[ASN][1000 genomes] |
rs9673283 | 0.82[ASN][1000 genomes] |
rs9673726 | 0.82[ASN][1000 genomes] |
rs9673849 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9673979 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9922528 | 0.82[ASN][1000 genomes] |
rs9924366 | 0.82[ASN][1000 genomes] |
rs9924383 | 0.82[ASN][1000 genomes] |
rs9924824 | 0.82[ASN][1000 genomes] |
rs9929546 | 0.82[ASN][1000 genomes] |
rs9934937 | 0.82[ASN][1000 genomes] |
rs9937254 | 0.82[ASN][1000 genomes] |
rs9940763 | 0.82[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3451298 | chr16:80696935-80997389 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
2 | esv3350075 | chr16:80696955-80997359 | Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
3 | nsv948534 | chr16:80867635-81160492 | Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 55 gene(s) | inside rSNPs | diseases |
4 | nsv1065258 | chr16:80887483-81081768 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
5 | nsv1058045 | chr16:80918138-81048242 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
6 | nsv1064164 | chr16:80918138-81126967 | Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
7 | nsv542991 | chr16:80918138-81126967 | Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 52 gene(s) | inside rSNPs | diseases |
8 | nsv1059905 | chr16:80954876-80998523 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
9 | esv2760441 | chr16:80954888-80998523 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | Chromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
10 | nsv520122 | chr16:80955393-81001915 | Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
11 | nsv907004 | chr16:80958442-81001915 | Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | 10 gene(s) | inside rSNPs | diseases |
12 | nsv1058131 | chr16:80967367-80998523 | Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 8 gene(s) | inside rSNPs | diseases |
13 | esv2756816 | chr16:80972279-81027142 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
14 | esv2758663 | chr16:80972279-81027142 | Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
15 | nsv532569 | chr16:80980356-81700149 | Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 71 gene(s) | inside rSNPs | diseases |
16 | nsv817744 | chr16:80989859-81027685 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
17 | esv11135 | chr16:80997245-81028812 | Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
18 | esv3361273 | chr16:80997277-80997343 | Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:80989400-81008800 | Weak transcription | Gastric | stomach |
2 | chr16:80994600-81007800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
3 | chr16:80994600-81026400 | Weak transcription | HSMMtube | muscle |
4 | chr16:80994800-81023400 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr16:80995400-81003200 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
6 | chr16:80996000-81007400 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
7 | chr16:80996200-81008600 | Weak transcription | Aorta | Aorta |
8 | chr16:80996600-81018600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |