Variant report

Variant	rs73589543
Chromosome Location	chr6:128664964-128664965
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57342961	1.00[AMR][1000 genomes]
rs60116911	1.00[AMR][1000 genomes]
rs73589550	1.00[AMR][1000 genomes]
rs73589565	1.00[AMR][1000 genomes]
rs73589573	1.00[AMR][1000 genomes]
rs73589581	1.00[AMR][1000 genomes]
rs73589587	1.00[AMR][1000 genomes]
rs73589590	1.00[AMR][1000 genomes]
rs73591310	1.00[AMR][1000 genomes]
rs73591311	1.00[AMR][1000 genomes]
rs73596687	1.00[AMR][1000 genomes]
rs9482879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128632200-128665200	Weak transcription	Gastric	stomach
2	chr6:128635600-128672000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:128649200-128665600	Weak transcription	Left Ventricle	heart
4	chr6:128649400-128671800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:128649400-128678600	Weak transcription	HSMM	muscle
6	chr6:128657800-128667800	Weak transcription	Fetal Kidney	kidney
7	chr6:128659800-128671400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:128660000-128666200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:128660000-128667400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:128660000-128667800	Weak transcription	Ovary	ovary
11	chr6:128661200-128665200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr6:128661200-128667800	Weak transcription	Brain Anterior Caudate	brain
13	chr6:128661400-128665000	Weak transcription	Colon Smooth Muscle	Colon
14	chr6:128661400-128671800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:128661400-128677200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr6:128661600-128665000	Weak transcription	Fetal Intestine Small	intestine
17	chr6:128661600-128665200	Weak transcription	Brain Substantia Nigra	brain
18	chr6:128661600-128665200	Weak transcription	Small Intestine	intestine
19	chr6:128661600-128666600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:128661600-128667800	Weak transcription	Fetal Intestine Large	intestine
21	chr6:128661600-128679400	Weak transcription	Osteobl	bone
22	chr6:128661800-128665000	Weak transcription	Stomach Mucosa	stomach
23	chr6:128661800-128665200	Weak transcription	NHLF	lung
24	chr6:128661800-128671200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr6:128662000-128665200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:128662200-128666400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:128662800-128665000	Weak transcription	Fetal Lung	lung
28	chr6:128663000-128670000	Weak transcription	Liver	Liver
29	chr6:128664400-128666200	Enhancers	Fetal Stomach	stomach
30	chr6:128664800-128665200	Enhancers	Rectal Smooth Muscle	rectum
31	chr6:128664800-128665800	Enhancers	HepG2	liver
32	chr6:128664800-128668800	Enhancers	Fetal Heart	heart

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