Variant report

Variant	rs73589565
Chromosome Location	chr6:128739199-128739200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128738191..128740264-chr6:128840068..128842572,2	MCF-7	breast:
2	chr6:128733005..128734621-chr6:128736673..128739211,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000152894	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57342961	1.00[AMR][1000 genomes]
rs60116911	1.00[AMR][1000 genomes]
rs73589543	1.00[AMR][1000 genomes]
rs73589550	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589573	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589581	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73589587	1.00[AMR][1000 genomes]
rs73589590	1.00[AMR][1000 genomes]
rs73591310	1.00[AMR][1000 genomes]
rs73591311	1.00[AMR][1000 genomes]
rs73591384	1.00[AMR][1000 genomes]
rs73596687	1.00[AMR][1000 genomes]
rs9482879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128698800-128743200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:128703200-128743000	Weak transcription	Pancreas	Pancrea
3	chr6:128710200-128739800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:128715600-128743000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:128716600-128739400	Weak transcription	Aorta	Aorta
6	chr6:128717200-128739600	Weak transcription	NH-A	brain
7	chr6:128722400-128740000	Weak transcription	Right Ventricle	heart
8	chr6:128728600-128739400	Weak transcription	Fetal Intestine Small	intestine
9	chr6:128728600-128742800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:128728800-128748000	Weak transcription	Ovary	ovary
11	chr6:128731000-128753400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:128732400-128739400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:128732400-128739400	Weak transcription	Left Ventricle	heart
14	chr6:128732400-128752400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:128732800-128742800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:128734200-128748400	Weak transcription	Gastric	stomach
17	chr6:128734600-128739400	Weak transcription	HSMM	muscle
18	chr6:128734800-128739400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:128734800-128742800	Weak transcription	Fetal Lung	lung
20	chr6:128735600-128739400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:128735600-128743400	Weak transcription	NHEK	skin
22	chr6:128736600-128739400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:128736800-128740000	Weak transcription	HepG2	liver
24	chr6:128737200-128739400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:128737200-128742800	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:128737400-128741800	Weak transcription	Brain Substantia Nigra	brain
27	chr6:128738200-128739200	Enhancers	HSMMtube	muscle
28	chr6:128738600-128739200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr6:128738600-128742600	Weak transcription	Brain Anterior Caudate	brain
30	chr6:128738800-128739200	Active TSS	Stomach Smooth Muscle	stomach
31	chr6:128738800-128739200	Enhancers	Osteobl	bone
32	chr6:128738800-128739600	Enhancers	Fetal Heart	heart
33	chr6:128738800-128741800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr6:128739000-128739200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:128739000-128739200	Strong transcription	Fetal Thymus	thymus
36	chr6:128739000-128739200	Flanking Active TSS	Psoas Muscle	Psoas
37	chr6:128739000-128739600	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr6:128739000-128739800	Enhancers	Liver	Liver
39	chr6:128739000-128740400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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